View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13622_high_15 (Length: 302)
Name: NF13622_high_15
Description: NF13622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13622_high_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 14 - 286
Target Start/End: Complemental strand, 10198492 - 10198214
Alignment:
| Q |
14 |
atatcgtgaaaatcatgatttaaatcaactcttttatcattagagttcgtgcgctcatgagtttatttatatagatcttttaatttttaatacaatattn |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
10198492 |
atatcgtgaaaatcatgatttaaatcaactcttttatcattagagttggtgcgctcatgagtttatttatatagatcttttaattttaaatacaatatta |
10198393 |
T |
|
| Q |
114 |
nnnnnnn--ttaattgtattttctaatcactattattttcatctttcaagtcaatctttttcactatatatattatggtaat----gagtcactcatcat |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10198392 |
aaaaaaaaattaattgtattttctaatcactattattttcatctttcaagtcaatctttttcactatatatattatggtaattaatgagtcactcatcat |
10198293 |
T |
|
| Q |
208 |
aagacggaaagaatatacgtttgtatataaaataaatgtgaacatagtccaatgactagttaacatttatggaaaacct |
286 |
Q |
| |
|
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
10198292 |
gagactgagagaatatacgtttgtatataaaataaatgtgaacatagtccaatgactacttaacatttatggaaaacct |
10198214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University