View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13622_high_18 (Length: 240)
Name: NF13622_high_18
Description: NF13622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13622_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 14150764 - 14150974
Alignment:
| Q |
18 |
agaatcagcactgacagcagctcccgagtctgctacaacaccaacagcactggaaatcagcttcggtctatttgcttcacgccattcatacaacagctgt |
117 |
Q |
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| T |
14150764 |
agaatcagcactgacagcagctcccgagtctgctacaacaccaacagcactggaaatcagcttcggtctatttgcttcacgccattcatacaacagctgt |
14150863 |
T |
|
| Q |
118 |
cttgctctagctgaaatcacttgggacgtctctaaaatattctcccatactcgtaagttccgactcttccataaactccataaattcatagcaaactgct |
217 |
Q |
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|||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14150864 |
tttgctctagctgaaatcacttgggacttttctgaaatattctcccatactcgtaagttccgactcttccataaactccataaattcatagcaaactgct |
14150963 |
T |
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| Q |
218 |
cagctttctcc |
228 |
Q |
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||||||||||| |
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| T |
14150964 |
cagctttctcc |
14150974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 18 - 188
Target Start/End: Original strand, 27805142 - 27805314
Alignment:
| Q |
18 |
agaatcagcactgacagcagctcccgagtctgctacaacaccaacagcactggaaatcagcttcggtctatttgcttcacgccatt--catacaacagct |
115 |
Q |
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||||||| ||||||||||||||||||||||||||||| ||||| ||||||| |||||||||| | ||||||||||||| ||| || ||||||||| || |
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| T |
27805142 |
agaatcaacactgacagcagctcccgagtctgctacagcaccagcagcactagaaatcagctacagtctatttgcttctcgcaatatccatacaacacct |
27805241 |
T |
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| Q |
116 |
gtcttgctctagctgaaatcacttgggacgtctctaaaatattctcccatactcgtaagttccgactcttcca |
188 |
Q |
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| T |
27805242 |
gccttgctctagctgaaatcacttggcacgtctctgaaatattctcccatactcttatgttccgactcttcca |
27805314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 152 - 215
Target Start/End: Original strand, 27040358 - 27040421
Alignment:
| Q |
152 |
aaatattctcccatactcgtaagttccgactcttccataaactccataaattcatagcaaactg |
215 |
Q |
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||||||||| ||||| ||| | |||||||||||||||||||||||||||||||| |||||||| |
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| T |
27040358 |
aaatattctgccatattcgaagattccgactcttccataaactccataaattcatcgcaaactg |
27040421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 229
Target Start/End: Original strand, 30274173 - 30274316
Alignment:
| Q |
86 |
tatttgcttcacgccattcatacaacagctgtcttgctctagctgaaatcacttgggacgtctctaaaatattctcccatactcgtaagttccgactctt |
185 |
Q |
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|||||||||| | ||| |||| |||||||| ||||||| | ||| ||| | ||| || ||||| |||| |||| ||| |||| || ||| ||||||| |
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| T |
30274173 |
tatttgcttctctccagtcatgtaacagctgccttgctcgaactgtaatggcctggcacatctctgaaatgttctgccaaactcttagattctgactctt |
30274272 |
T |
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| Q |
186 |
ccataaactccataaattcatagcaaactgctcagctttctcct |
229 |
Q |
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|||||| | || ||||||||||||||||| || |||||||||| |
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| T |
30274273 |
ccataaccaccgtaaattcatagcaaactattcggctttctcct |
30274316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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