View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13622_high_21 (Length: 236)
Name: NF13622_high_21
Description: NF13622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13622_high_21 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 53589836 - 53589643
Alignment:
| Q |
18 |
tttttaccattaaacaaatccttagaaaaacatctnnnnnnncataccataaacaccttcaaaatgcagttatggtttggaactnnnnnnntgtaaaaag |
117 |
Q |
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| T |
53589836 |
tttttaccattaaacaaatccttagaaaaacat------------accataaacaccttcaaaatgcagttatggtgtggaactaaaaaaatataaaaag |
53589749 |
T |
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| Q |
118 |
ccaaacaatagatgaagtagtaggtataattaatacattaagcaaacaataaagacagatacagaggagttaagcaatttaatacaacagacagtatcca |
217 |
Q |
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| T |
53589748 |
ccaaacaatagatgaagta-------------atacattaagcaaacaataaagacagatacagaggagttaaacaatttaatacaacagacagtatcca |
53589662 |
T |
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