View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13622_high_6 (Length: 599)
Name: NF13622_high_6
Description: NF13622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13622_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 68 - 577
Target Start/End: Original strand, 25127709 - 25128218
Alignment:
| Q |
68 |
catcatcgattctgctcattggcacttcacctgattcaattaaagaggtcaattcttcgatgaataatttgtacctgacagccaccatcacctgcgtaaa |
167 |
Q |
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| T |
25127709 |
catcatcgattctgctcattggcacttcacctgattcaattaaagaggtcaattcttcgatgaatagtttgtacctgacagccaccatcacctgcgtaaa |
25127808 |
T |
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| Q |
168 |
tattattgaataggtgaaaacatagtaagaaaatacactatgatgaaagataattggaactgaagatatgtaccatgtcaattccagcattgacggcaga |
267 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25127809 |
tattattgaataggtgaaaacatagtaagaaaatacactatgatgaaagataattggaactgaagatatgtaccatgtcaattccagcattgacggcaga |
25127908 |
T |
|
| Q |
268 |
ggagatgcagtaccgataatctgacccgtgaggtttacaaagtcggtcgagcccctcccagtcggaaatcacaaaaccctacagcagcaattgtcaataa |
367 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25127909 |
ggagatgcagtaccgataatctgacccgtgaggtttacaaagtcggtcgagcccctcccagtcggaaatcacaaaaccctacagcagcaattgtcaataa |
25128008 |
T |
|
| Q |
368 |
tatgcacnnnnnnntataatagtagctaatattgcaaaaaatttggtacatactttaaaagcatattgatgcaaaagcaacttgaagagttagtcagtga |
467 |
Q |
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| T |
25128009 |
tatgcacaaaaaaatataatagtagctaatattgcaaaaaatttggtacatactttgaaagcatattgatgcaaaagcaacttgaagagttagtcagtga |
25128108 |
T |
|
| Q |
468 |
tagataatcagtcattttaccttaaaacctagtttttctttcaagatctcggttaaaagaaaatggtcggcatgaagtttgcgcccattccagctagtat |
567 |
Q |
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| T |
25128109 |
tagataatcagtcattttaccttaaaacctagtttttctttcaagatttcggttaaaagaaaatggtcggcatgaagtttgcgcccattccagctagtat |
25128208 |
T |
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| Q |
568 |
aggacgccat |
577 |
Q |
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| T |
25128209 |
aggacgccat |
25128218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 226 - 350
Target Start/End: Complemental strand, 29611767 - 29611643
Alignment:
| Q |
226 |
actgaagatatgtaccatgtcaattccagcattgacggcagaggagatgcagtaccgataatctgacccgtgaggtttacaaagtcggtcgagcccctcc |
325 |
Q |
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||||||||| ||||||||||||||||||||||| | | || ||||||||| || |||||||| ||||| | ||||| || | | || | |||||| |
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| T |
29611767 |
actgaagatctgtaccatgtcaattccagcattaattgaagtggagatgcaataacgataatcggacccataaggttggcataattcatcaattccctcc |
29611668 |
T |
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| Q |
326 |
cagtcggaaatcacaaaaccctaca |
350 |
Q |
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| T |
29611667 |
cagtcagaaatcacaaaaccctaca |
29611643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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