View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13622_high_7 (Length: 520)

Name: NF13622_high_7
Description: NF13622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13622_high_7
NF13622_high_7
[»] chr2 (6 HSPs)
chr2 (20-471)||(32703701-32704156)
chr2 (193-274)||(17882966-17883046)
chr2 (165-274)||(31449995-31450104)
chr2 (153-199)||(17152179-17152225)
chr2 (214-275)||(19920067-19920127)
chr2 (227-283)||(19541137-19541193)
[»] chr4 (10 HSPs)
chr4 (111-274)||(53001146-53001308)
chr4 (151-268)||(20044202-20044319)
chr4 (152-274)||(13275712-13275834)
chr4 (221-282)||(30624960-30625021)
chr4 (227-275)||(16442225-16442273)
chr4 (217-283)||(10576543-10576609)
chr4 (167-199)||(4732790-4732822)
chr4 (242-274)||(9526811-9526843)
chr4 (167-267)||(24042333-24042433)
chr4 (167-283)||(26159796-26159912)
[»] chr8 (3 HSPs)
chr8 (153-280)||(10867014-10867141)
chr8 (109-218)||(28831761-28831870)
chr8 (153-280)||(29291797-29291923)
[»] chr6 (4 HSPs)
chr6 (214-273)||(12878076-12878135)
chr6 (167-265)||(23946819-23946917)
chr6 (225-283)||(24617609-24617667)
chr6 (107-159)||(33559919-33559971)
[»] chr7 (3 HSPs)
chr7 (167-291)||(10253691-10253815)
chr7 (184-275)||(5214038-5214127)
chr7 (220-274)||(23804331-23804384)
[»] chr1 (2 HSPs)
chr1 (153-199)||(18391108-18391154)
chr1 (153-206)||(21548674-21548727)
[»] chr3 (3 HSPs)
chr3 (153-206)||(21829168-21829221)
chr3 (151-236)||(26775079-26775163)
chr3 (225-282)||(28206096-28206152)
[»] scaffold0007 (1 HSPs)
scaffold0007 (220-294)||(218041-218114)
[»] scaffold0113 (1 HSPs)
scaffold0113 (225-282)||(47780-47837)
[»] chr5 (4 HSPs)
chr5 (220-269)||(11841262-11841310)
chr5 (153-206)||(24410965-24411018)
chr5 (178-283)||(30790827-30790932)
chr5 (227-283)||(26070574-26070630)


Alignment Details
Target: chr2 (Bit Score: 367; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 20 - 471
Target Start/End: Complemental strand, 32704156 - 32703701
Alignment:
Q  20 acgaggagtatgatgattgaccataataccaagaggattggtaatacctcattgtatgatgtttagacatgtttgtaggtcattttcaataagcatttga 119  Q
    |||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||| |||||||||||||||||| |||||||||||||    
T  32704156 acgaggagtatgatgattgaccataataccaagaggatcggtaacacctcatcgtatgatgtttagatatgtttgtaggtcatttttaataagcatttga 32704057  T
Q  120 agacaattcagaggatttttagattatttgctcatggtttgagacatattttatattattttcatttgagtcgttgtaatccagtttcttctctaactat 219  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  32704056 agacaattcataggatttttagattatttgctcatggtttaagacatattttgtattattttcatttgagtcgttgtaatccggtttcttctctaactat 32703957  T
Q  220 acaatttcataagtgttttgaatctttttattgataaattatgtaattcggcaaaataagacatttcatggaagacatctctacacacattctatgcggg 319  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||| |||||| ||| ||    
T  32703956 acaacttcataagtgttttgaatctttttattgataaattatgtaattccgcaaaacaagacatctcatggaagacatctctacacgcattctgtgcagg 32703857  T
Q  320 taaaatcggatttatgcggatttctacttaatggactgggagaaaaaactcataat----tataatttaaacacaactgaaaaaatatctatagatagag 415  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||    
T  32703856 taaaattggatttatgcggatttctacttagtggactgggagaaaaaactcataattatatataatttaaacacaactgaaaaaatatctatagatagag 32703757  T
Q  416 ttcatttcaattggaaacttggcggttcaaggaaatgagaccatcaggagtatcaa 471  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32703756 ttcatttcaattggaaacttggcggttcaaggaaatgagaccatcaggagtatcaa 32703701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 193 - 274
Target Start/End: Original strand, 17882966 - 17883046
Alignment:
Q  193 ttgtaatccagtttcttctctaactatacaatttcataagtgttttgaatctttttattgataaattatgtaattcggcaaa 274  Q
    ||||||| | ||||||| || ||| | |||||||||||  |||||||| |||||| |||||||||| |||||||||||||||    
T  17882966 ttgtaattcggtttcttttcaaaccagacaatttcatagttgttttgagtctttt-attgataaatcatgtaattcggcaaa 17883046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 165 - 274
Target Start/End: Original strand, 31449995 - 31450104
Alignment:
Q  165 atattttatattattttcatttgagtcgttgtaatccagtttcttctctaactatacaatttcataagtgttttgaatctttttattgataaattatgta 264  Q
    ||||||| |||| |||||||| ||||| || |||  |||||| |||  ||| ||| ||| || ||| ||||||||| | ||||||||||||||| ||||     
T  31449995 atattttgtatttttttcattagagtcattataaatcagtttattccttaattatgcaactttataggtgttttgagtatttttattgataaatcatgtg 31450094  T
Q  265 attcggcaaa 274  Q
    ||||||||||    
T  31450095 attcggcaaa 31450104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 153 - 199
Target Start/End: Original strand, 17152179 - 17152225
Alignment:
Q  153 atggtttgagacatattttatattattttcatttgagtcgttgtaat 199  Q
    ||||||||||  ||||||| ||||||||||||| |||||||||||||    
T  17152179 atggtttgaggaatattttgtattattttcattcgagtcgttgtaat 17152225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 275
Target Start/End: Complemental strand, 19920127 - 19920067
Alignment:
Q  214 aactatacaatttcataagtgttttgaatctttttattgataaattatgtaattcggcaaaa 275  Q
    ||||| ||||||||||| ||||||||||| || ||||||| |||| ||||||||||| ||||    
T  19920127 aactaaacaatttcataggtgttttgaat-ttattattgaaaaatcatgtaattcggaaaaa 19920067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 227 - 283
Target Start/End: Original strand, 19541137 - 19541193
Alignment:
Q  227 cataagtgttttgaatctttttattgataaattatgtaattcggcaaaataagacat 283  Q
    |||| ||||||||| ||||| || ||| |||| |||||| |||||||||||||||||    
T  19541137 cataggtgttttgagtctttctagtgagaaatcatgtaaatcggcaaaataagacat 19541193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 6e-23; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 111 - 274
Target Start/End: Complemental strand, 53001308 - 53001146
Alignment:
Q  111 agcatttgaagacaattcagaggatttttagattatttgctcatggtttgagacatattttatattattttcatttgagtcgttgtaatccagtttcttc 210  Q
    ||||||||||||||| | |||||   ||||||  | ||| |||||||||||   ||||||||||||||||||||| || || |||||||  ||||||||     
T  53001308 agcatttgaagacaacttagaggtaatttagaggagttgttcatggtttgaaggatattttatattattttcattcgattcattgtaatttagtttcttt 53001209  T
Q  211 tctaactatacaatttcataagtgttttgaatctttttattgataaattatgtaattcggcaaa 274  Q
     ||||  |||||| |||||||||||||| |||||||||| ||||| | ||||||||||||||||    
T  53001208 cctaatcatacaacttcataagtgtttttaatctttttaatgataca-tatgtaattcggcaaa 53001146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 151 - 268
Target Start/End: Original strand, 20044202 - 20044319
Alignment:
Q  151 tcatggtttgagacatattttatattattttcatttgagtcgttgtaatccagtttcttctctaactatacaatttcataagtgttttgaatctttttat 250  Q
    |||||||| |||| | |||||||||| |||||||| ||||| ||||||| || |||||||  |||  || ||| | |||| || |||||| |||||||||    
T  20044202 tcatggttcgagagacattttatattgttttcattcgagtcattgtaattcaatttcttccttaatcatgcaactccatatgtattttgagtctttttat 20044301  T
Q  251 tgataaattatgtaattc 268  Q
    ||| |||| |||||||||    
T  20044302 tgaaaaatcatgtaattc 20044319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 152 - 274
Target Start/End: Complemental strand, 13275834 - 13275712
Alignment:
Q  152 catggtttgagacatattttatattattttcatttgagtcgttgtaatccagtttcttctctaactatacaatttcataagtgttttgaatctttttatt 251  Q
    |||||||||||| | || || |||| |||||||| |||||||| |||| || |||| || | ||  |||||| |   || ||||||||| ||||||||||    
T  13275834 catggtttgagaaacatgttgtattgttttcattcgagtcgttataattcactttcatcccaaatcatacaactctgtaggtgttttgagtctttttatt 13275735  T
Q  252 gataaattatgtaattcggcaaa 274  Q
    | ||||| |||||||||||||||    
T  13275734 gctaaatcatgtaattcggcaaa 13275712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 221 - 282
Target Start/End: Original strand, 30624960 - 30625021
Alignment:
Q  221 caatttcataagtgttttgaatctttttattgataaattatgtaattcggcaaaataagaca 282  Q
    |||||||||| ||||||||| |||||||||||| |||| |||||||||  |||| |||||||    
T  30624960 caatttcataggtgttttgagtctttttattgaaaaatcatgtaattctacaaagtaagaca 30625021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 227 - 275
Target Start/End: Complemental strand, 16442273 - 16442225
Alignment:
Q  227 cataagtgttttgaatctttttattgataaattatgtaattcggcaaaa 275  Q
    |||||||||||||| |||||||| |||||||| ||||||||||| ||||    
T  16442273 cataagtgttttgactctttttaatgataaatcatgtaattcggtaaaa 16442225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 217 - 283
Target Start/End: Original strand, 10576543 - 10576609
Alignment:
Q  217 tatacaatttcataagtgttttgaatctttttattgataaattatgtaattcggcaaaataagacat 283  Q
    ||||||| |||||| ||||||||| ||||| || ||| ||||||||||| |||| |||| |||||||    
T  10576543 tatacaacttcataggtgttttgattctttctagtgagaaattatgtaaatcggaaaaacaagacat 10576609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 4732790 - 4732822
Alignment:
Q  167 attttatattattttcatttgagtcgttgtaat 199  Q
    |||||||||| ||||||||||||||||||||||    
T  4732790 attttatattgttttcatttgagtcgttgtaat 4732822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 242 - 274
Target Start/End: Complemental strand, 9526843 - 9526811
Alignment:
Q  242 tctttttattgataaattatgtaattcggcaaa 274  Q
    |||||||||||||| ||||||||||||||||||    
T  9526843 tctttttattgatatattatgtaattcggcaaa 9526811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 167 - 267
Target Start/End: Complemental strand, 24042433 - 24042333
Alignment:
Q  167 attttatattattttcatttgagtcgttgtaatccagtttcttctctaactatacaatttcataagtgttttgaatctttttattgataaattatgtaat 266  Q
    ||||| |||| |||| ||||||||| |||||||    ||||||   |||||| ||||||||||| ||||||||| | |||||| |||||||| | |||||    
T  24042433 attttgtattgttttgatttgagtcattgtaatttcatttctttcataactagacaatttcataggtgttttgagtttttttactgataaatcacgtaat 24042334  T
Q  267 t 267  Q
    |    
T  24042333 t 24042333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 167 - 283
Target Start/End: Original strand, 26159796 - 26159912
Alignment:
Q  167 attttatattattttcatttgagtcgttgtaatccagtttcttctctaactatacaatttcataagtgttttgaatctttttattgataaattatgtaat 266  Q
    ||||| |||| |||||||| |||||||||||||  |||||  ||   || ||| ||| |||||| ||||||||| |||||||| ||| |||| |||||      
T  26159796 attttgtattgttttcattcgagtcgttgtaatttagttttgtcctaaattatccaacttcatatgtgttttgagtctttttagtgaaaaatcatgtaga 26159895  T
Q  267 tcggcaaaataagacat 283  Q
    || |||||| |||||||    
T  26159896 tcagcaaaacaagacat 26159912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 153 - 280
Target Start/End: Original strand, 10867014 - 10867141
Alignment:
Q  153 atggtttgagacatattttatattattttcatttgagtcgttgtaatccagtttcttctctaactatacaatttcataagtgttttgaatctttttattg 252  Q
    ||||||||||  ||||||| |||| |||||||||||||||||||||| ||||||  |||| ||  || ||| | || | ||| |||||||||||||| ||    
T  10867014 atggtttgaggaatattttgtattgttttcatttgagtcgttgtaattcagttttatctcaaatcatgcaactccaaaggtgctttgaatctttttagtg 10867113  T
Q  253 ataaattatgtaattcggcaaaataaga 280  Q
    | |||| |||||| ||||||||| ||||    
T  10867114 agaaatcatgtaagtcggcaaaacaaga 10867141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 109 - 218
Target Start/End: Original strand, 28831761 - 28831870
Alignment:
Q  109 taagcatttgaagacaattcagaggatttttagattatttgctcatggtttgagacatattttatattattttcatttgagtcgttgtaatccagtttct 208  Q
    ||||||||||||||||||  ||| || |||||||| | ||||||||| ||| ||  | | ||  ||||||||| |||||||||||||||||   ||||||    
T  28831761 taagcatttgaagacaatatagatgagttttagataagttgctcatgatttaaggaacaattagtattattttgatttgagtcgttgtaattttgtttct 28831860  T
Q  209 tctctaacta 218  Q
    || |||||||    
T  28831861 tccctaacta 28831870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 280
Target Start/End: Original strand, 29291797 - 29291923
Alignment:
Q  153 atggtttgagacatattttatattattttcatttgagtcgttgtaatccagtttcttctctaact-atacaatttcataagtgttttgaatctttttatt 251  Q
    ||||||||||  || ||||||||| |||||||||||||||||||||| ||||||  || |||| | || ||| || |||||| |||||| |||||||| |    
T  29291797 atggtttgaggaattttttatatt-ttttcatttgagtcgttgtaatgcagttttatc-ctaaatcatgcaactttataagtattttgagtctttttagt 29291894  T
Q  252 gataaattatgtaattcggcaaaataaga 280  Q
     | |||| |||||| ||||||||| ||||    
T  29291895 aagaaatcatgtaaatcggcaaaacaaga 29291923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 214 - 273
Target Start/End: Original strand, 12878076 - 12878135
Alignment:
Q  214 aactatacaatttcataagtgttttgaatctttttattgataaattatgtaattcggcaa 273  Q
    ||||| ||||||| ||| ||||||||||||||||||||| ||||||||||||||| ||||    
T  12878076 aactagacaattttataggtgttttgaatctttttattgctaaattatgtaattccgcaa 12878135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 167 - 265
Target Start/End: Complemental strand, 23946917 - 23946819
Alignment:
Q  167 attttatattattttcatttgagtcgttgtaatccagtttcttctctaactatacaatttcataagtgttttgaatctttttattgataaattatgtaa 265  Q
    ||||| |||| |||||||||||||| ||||||| |  ||||||| | ||    |||| |||||||||||||||| ||||||||||||||||| ||||||    
T  23946917 attttgtattgttttcatttgagtctttgtaattctatttcttcacaaaaccgacaacttcataagtgttttgagtctttttattgataaatcatgtaa 23946819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 225 - 283
Target Start/End: Original strand, 24617609 - 24617667
Alignment:
Q  225 ttcataagtgttttgaatctttttattgataaattatgtaattcggcaaaataagacat 283  Q
    ||||| |||||||||| |||||||| ||| ||||||||||| || |||||| |||||||    
T  24617609 ttcatgagtgttttgagtctttttagtgagaaattatgtaaatcagcaaaacaagacat 24617667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 107 - 159
Target Start/End: Original strand, 33559919 - 33559971
Alignment:
Q  107 aataagcatttgaagacaattcagaggatttttagattatttgctcatggttt 159  Q
    ||||||||||| || |||||| | |||| |||||||| |||||||||||||||    
T  33559919 aataagcatttaaaaacaatttataggagttttagatgatttgctcatggttt 33559971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 167 - 291
Target Start/End: Complemental strand, 10253815 - 10253691
Alignment:
Q  167 attttatattattttcatttgagtcgttgtaatccagtttcttctctaactatacaatttcataagtgttttgaatctttttattgataaattatgtaat 266  Q
    ||||| |||| |||||||| ||||| |||||||||| ||||||| |||| | | ||| ||||||  |||| ||| | ||||||||||||||| || ||||    
T  10253815 attttgtattgttttcattcgagtctttgtaatccaatttcttccctaattgtgcaacttcatagttgttctgattatttttattgataaatcatataat 10253716  T
Q  267 tcggcaaaataagacatttcatgga 291  Q
    | ||||||  |||||| | ||||||    
T  10253715 tgggcaaagcaagacactacatgga 10253691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 184 - 275
Target Start/End: Complemental strand, 5214127 - 5214038
Alignment:
Q  184 tttgagtcgttgtaatccagtttcttctctaactatacaatttcataagtgttttgaatctttttattgataaattatgtaattcggcaaaa 275  Q
    |||||||||||||||| || |||||| | |||| | |||| | |||| |||||  || ||||||||||||||||| ||||||||| ||||||    
T  5214127 tttgagtcgttgtaattcaatttcttttttaaccagacaactccatatgtgtt--gagtctttttattgataaatcatgtaattcagcaaaa 5214038  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 220 - 274
Target Start/End: Complemental strand, 23804384 - 23804331
Alignment:
Q  220 acaatttcataagtgttttgaatctttttattgataaattatgtaattcggcaaa 274  Q
    ||||||||||||||||||||| || ||||| ||| |||| |||||||||||||||    
T  23804384 acaatttcataagtgttttgagtc-ttttagtgaaaaatcatgtaattcggcaaa 23804331  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 199
Target Start/End: Original strand, 18391108 - 18391154
Alignment:
Q  153 atggtttgagacatattttatattattttcatttgagtcgttgtaat 199  Q
    ||||||||||  | |||||||||||||||||||||||||||||||||    
T  18391108 atggtttgagtaacattttatattattttcatttgagtcgttgtaat 18391154  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 206
Target Start/End: Original strand, 21548674 - 21548727
Alignment:
Q  153 atggtttgagacatattttatattattttcatttgagtcgttgtaatccagttt 206  Q
    ||||||||||| |  ||||||||| |||||||| ||||||||||||| ||||||    
T  21548674 atggtttgagaaactttttatattgttttcattcgagtcgttgtaattcagttt 21548727  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 153 - 206
Target Start/End: Complemental strand, 21829221 - 21829168
Alignment:
Q  153 atggtttgagacatattttatattattttcatttgagtcgttgtaatccagttt 206  Q
    ||||||||||  | ||||| ||||||||||||||||||||||||||| ||||||    
T  21829221 atggtttgaggaacattttgtattattttcatttgagtcgttgtaattcagttt 21829168  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 236
Target Start/End: Original strand, 26775079 - 26775163
Alignment:
Q  151 tcatggtttgagacatattttatattattttcatttgagtcgttgtaatccagtttcttctctaactatacaatttcataagtgtt 236  Q
    ||||||||||||  ||||||  |||| |||||||| ||||| || ||||||||||||||||||||  || ||| |||||| |||||    
T  26775079 tcatggtttgagggatatttg-tattgttttcattcgagtcattataatccagtttcttctctaatcatgcaacttcatatgtgtt 26775163  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 282
Target Start/End: Complemental strand, 28206152 - 28206096
Alignment:
Q  225 ttcataagtgttttgaatctttttattgataaattatgtaattcggcaaaataagaca 282  Q
    ||||||||||||||||| |||||| || ||||||  ||||||||||||||| ||||||    
T  28206152 ttcataagtgttttgaa-ctttttctttataaatcgtgtaattcggcaaaacaagaca 28206096  T

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Target: scaffold0007 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 220 - 294
Target Start/End: Original strand, 218041 - 218114
Alignment:
Q  220 acaatttcataagtgttttgaatctttttattgataaattatgtaattcggcaaaataagacatttcatggaaga 294  Q
    ||||||||| | ||||||||| || ||| ||||||||||||| |||||||||||  |||||||  ||||||||||    
T  218041 acaatttcaaaggtgttttgagtcattt-attgataaattatttaattcggcaagctaagacacctcatggaaga 218114  T

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Target: scaffold0113 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 282
Target Start/End: Complemental strand, 47837 - 47780
Alignment:
Q  225 ttcataagtgttttgaatctttttattgataaattatgtaattcggcaaaataagaca 282  Q
    |||||| ||||||||| ||||||||||  | ||||||||||||| |||||| ||||||    
T  47837 ttcatacgtgttttgattctttttattatttaattatgtaattccgcaaaacaagaca 47780  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 269
Target Start/End: Original strand, 11841262 - 11841310
Alignment:
Q  220 acaatttcataagtgttttgaatctttttattgataaattatgtaattcg 269  Q
    ||||||||||| ||||||||| |||||| ||||| |||||||||||||||    
T  11841262 acaatttcataggtgttttgagtctttt-attgaaaaattatgtaattcg 11841310  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 206
Target Start/End: Complemental strand, 24411018 - 24410965
Alignment:
Q  153 atggtttgagacatattttatattattttcatttgagtcgttgtaatccagttt 206  Q
    ||||||||||  | ||||| |||| |||||||||||||||||||||| ||||||    
T  24411018 atggtttgaggaaaattttgtattgttttcatttgagtcgttgtaattcagttt 24410965  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 283
Target Start/End: Original strand, 30790827 - 30790932
Alignment:
Q  178 ttttcatttgagtcgttgtaatccagtttcttctctaactatacaatttcataagtgttttgaatctttttattgataaattatgtaattcggcaaaata 277  Q
    |||| |||||||||||| |||| ||||||  ||   || ||| ||| |||||  ||||||||| |||||||| ||| ||||||||||| ||||||| | |    
T  30790827 tttttatttgagtcgttataattcagttttatcctaaattatccaacttcattggtgttttgagtctttttagtgaaaaattatgtaaatcggcaacaca 30790926  T
Q  278 agacat 283  Q
    ||||||    
T  30790927 agacat 30790932  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 227 - 283
Target Start/End: Original strand, 26070574 - 26070630
Alignment:
Q  227 cataagtgttttgaatctttttattgataaattatgtaattcggcaaaataagacat 283  Q
    |||||||||||||| |||||||| ||| |||| |||||| | ||||||| |||||||    
T  26070574 cataagtgttttgagtctttttagtgagaaatcatgtaaattggcaaaacaagacat 26070630  T

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