View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13622_low_1 (Length: 873)
Name: NF13622_low_1
Description: NF13622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13622_low_1 |
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| [»] scaffold0082 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 486 - 854
Target Start/End: Original strand, 20514947 - 20515327
Alignment:
| Q |
486 |
gaataaatctacaaaataggtaacaacaaatttgaacaagttgatacaatggcgtgttagtgagaagacaaagtcgcagtggtgcgaaaacaaagaccac |
585 |
Q |
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| T |
20514947 |
gaataaatctagaaaataggtaacaacaaatttgaacaaggtgatacaatggcgtgttagtgagaagacaaagtcgcggtggtgcgaaaacaaaaaccac |
20515046 |
T |
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| Q |
586 |
ggtgatggagtgccttgtatgcgacaaagt------------tgcggcctgcatgtacacaacttataatagtttgcaaacttgtttcgtggtttctccc |
673 |
Q |
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| T |
20515047 |
ggtgatggagtgccttgtatgtgacaaagttcttgtagaagttgcggcctgcatgtggacaacttataatagtttgcaaacttgcttcgtggtttctccc |
20515146 |
T |
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| Q |
674 |
ctacatataacaatgcaatgaagatgaacgtgtgttatggtctagtgggagagagaagcgcgaatagagtaaggaaaggagatgattcaaatgaaataaa |
773 |
Q |
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| T |
20515147 |
ctacatataacaatgcaatgaagatgaacgtgtgctatggtctagtgggagagagaagcgccaacagagtaagggaaggagatgattcaaatgaaataaa |
20515246 |
T |
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| Q |
774 |
tttgaaaaaacctcgagaagggaaatgcaaaagaatgaattatttttcatacaaattttgggtgttgtgtttgattacaat |
854 |
Q |
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| T |
20515247 |
tttgaaaaaacctcgagaagggaaatgcaaaagaatgaattatttttcatacaaattttgggtgctgtgtttgattacaat |
20515327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 20514311 - 20514492
Alignment:
| Q |
1 |
ttattctcttatattgttatcctcaaaacatcaagattaggaactgtacctcgaccaatttggttccaacaagagtgagaagagagaaataggnnnnnnn |
100 |
Q |
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| T |
20514311 |
ttattcttttatattgttatcctcaaaacatcaagattaggaactgtacctcgaccaatttggttccaacaagagtgagaagagagaaataggaaaaaaa |
20514410 |
T |
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| Q |
101 |
taaatttaatatactgttcaatacgagagaagaaatatatataaaaaatgttgattaattttaaaagtacaagatttcctag |
182 |
Q |
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| T |
20514411 |
taaatttaatatactgttcaatacgagagaagaaatatataaaaaaaatgttgattaattttaaaagtacaagatttcctag |
20514492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0082 (Bit Score: 143; Significance: 1e-74; HSPs: 1)
Name: scaffold0082
Description:
Target: scaffold0082; HSP #1
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 329 - 479
Target Start/End: Original strand, 30663 - 30813
Alignment:
| Q |
329 |
gccaagcgattcacctgatccaaacacgccaataggcggctttgaagatagtaagtaagagtagtggcattctcatcaaaaggataagtaagttcgcaat |
428 |
Q |
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| T |
30663 |
gccaagcgattcacctgatccagacacgccaataggcggctttgaagatagtaagtaagagtagtggcattctcatcaaaaggataagtaagttcgcaat |
30762 |
T |
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| Q |
429 |
ccagcgataaagtgaaaaaaggtgcttttttctgcgcatattcccaggtta |
479 |
Q |
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| T |
30763 |
ccagtgataaagtgaaaaaaggtgcttttttctgcgcatattcccaggtta |
30813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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