View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13622_low_10 (Length: 362)
Name: NF13622_low_10
Description: NF13622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13622_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 13 - 323
Target Start/End: Original strand, 8696265 - 8696575
Alignment:
| Q |
13 |
aatattatacatacttttaaacattggatcatgtggtataccttcaagcatcgacaaacaaaactccaaccgcaatcttttaccttcctcggttagttgt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
8696265 |
aatattatacatacttttaaacattggatcatgtggtataccttcaagcatcgacaaacaaaactccaaccgcaatcttttaccttcctctgttagttgt |
8696364 |
T |
|
| Q |
113 |
ggctttatggcactcgaatgacgttgtattgcacctgataatataatcctatatactgcacttgtatttgtattcatggcaacagctaaagttcgaacag |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8696365 |
ggctttatggcactcgaatgacgttgtattgcacctgataatataagcctatataatgcacttgtatttgtattcatggcaacagctaaagttcgaacag |
8696464 |
T |
|
| Q |
213 |
ttgttcttttactcaaagggatttcacgaatttgactcacatcaatttcaactctcttgcgaccactattttttgtcttcttatgagacacatcatgtgt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8696465 |
ttgttcttttactcaaagggatttcacgaatttgactcacatcaatttcaactctcttgcgaccactattttttgtcttcttatgagacacatcatgtgt |
8696564 |
T |
|
| Q |
313 |
ctcactatcat |
323 |
Q |
| |
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|||||| |||| |
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| T |
8696565 |
ctcactttcat |
8696575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 183; Significance: 6e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 13 - 211
Target Start/End: Original strand, 34224054 - 34224252
Alignment:
| Q |
13 |
aatattatacatacttttaaacattggatcatgtggtataccttcaagcatcgacaaacaaaactccaaccgcaatcttttaccttcctcggttagttgt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
34224054 |
aatattatacatacttttaaacattggatcatgtggtataccttcaagcatcgacaaacaaaactccaaccgcaatcttttaccttcctctgttagttgt |
34224153 |
T |
|
| Q |
113 |
ggctttatggcactcgaatgacgttgtattgcacctgataatataatcctatatactgcacttgtatttgtattcatggcaacagctaaagttcgaaca |
211 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34224154 |
ggctttatggcactcgaatgacgttgtattgcaccttataatataagcctatatactgcacttgtatttgtattcatggcaacaactaaagttcgaaca |
34224252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 311
Target Start/End: Original strand, 33660649 - 33660744
Alignment:
| Q |
216 |
ttcttttactcaaagggatttcacgaatttgactcacatcaatttcaactctcttgcgaccactattttttgtcttcttatgagacacatcatgtg |
311 |
Q |
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||||||| |||||||| |||||||| ||||| | ||||||||||| |||||| || |||| |||||||||||| ||||||||||||||||| |
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| T |
33660649 |
ttctttttctcaaaggaatttcacggatttggttaggatcaatttcaattctcttacgtccacaattttttgtctttccatgagacacatcatgtg |
33660744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 307
Target Start/End: Complemental strand, 37933505 - 37933455
Alignment:
| Q |
257 |
atttcaactctcttgcgaccactattttttgtcttcttatgagacacatca |
307 |
Q |
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|||| ||||||||| || |||| |||||||||||| ||||||||||||||| |
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| T |
37933505 |
atttgaactctcttacgtccacaattttttgtctttttatgagacacatca |
37933455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 307
Target Start/End: Complemental strand, 10327891 - 10327841
Alignment:
| Q |
257 |
atttcaactctcttgcgaccactattttttgtcttcttatgagacacatca |
307 |
Q |
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|||| ||||||||| || |||| |||||||||||| ||||||||||||||| |
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| T |
10327891 |
atttgaactctcttacgtccacaattttttgtctttttatgagacacatca |
10327841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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