View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13622_low_25 (Length: 211)
Name: NF13622_low_25
Description: NF13622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13622_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 123; Significance: 2e-63; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 27302601 - 27302797
Alignment:
| Q |
1 |
caaattcaacccacctatgattctaggcgtagatgttgtgcccgcccccaatagaccaaaattcaaactccttaaaatttgatcaaagattgaca-nnnn |
99 |
Q |
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| T |
27302601 |
caaattcaacccacctatgattctaggcgtagatattgtgcccgctcccaataaaccaaaattcaaacttcttaaaatttgatcaaagattgacattttt |
27302700 |
T |
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| Q |
100 |
nnncatatgtgatgacaaagcatcatatgacattttgactatgnnnnnnnaataattttcgttgcatttgaagacaaatatgatgatagatagagaag |
197 |
Q |
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| T |
27302701 |
tttcatatgtgatgacaaagcatcatataacattttgactatg-ttttttaataattttcgttgcatttgaagacaaatatgatgatagatagagaag |
27302797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 109 - 193
Target Start/End: Complemental strand, 23519939 - 23519855
Alignment:
| Q |
109 |
tgatgacaaagcatcatatgacattttgactatgnnnnnnnaataattttcgttgcatttgaagacaaatatgatgatagataga |
193 |
Q |
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| T |
23519939 |
tgatgacaaagcatcatatgaccttttgactatgtttttttagtacttttctttgcttttgaagacaaatatgatgagagataga |
23519855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 109 - 142
Target Start/End: Complemental strand, 8247840 - 8247807
Alignment:
| Q |
109 |
tgatgacaaagcatcatatgacattttgactatg |
142 |
Q |
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| T |
8247840 |
tgatgacagagcatcatatgacattttgactatg |
8247807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 109 - 142
Target Start/End: Original strand, 35707735 - 35707768
Alignment:
| Q |
109 |
tgatgacaaagcatcatatgacattttgactatg |
142 |
Q |
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|||||||| ||||||||||||||||||||||||| |
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| T |
35707735 |
tgatgacagagcatcatatgacattttgactatg |
35707768 |
T |
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