View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13622_low_26 (Length: 208)

Name: NF13622_low_26
Description: NF13622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13622_low_26
NF13622_low_26
[»] chr1 (4 HSPs)
chr1 (19-185)||(40057735-40057899)
chr1 (127-183)||(27115906-27115962)
chr1 (126-185)||(27113975-27114034)
chr1 (126-182)||(40056689-40056745)
[»] chr8 (4 HSPs)
chr8 (127-186)||(5330435-5330494)
chr8 (131-183)||(28629222-28629274)
chr8 (127-185)||(5332671-5332729)
chr8 (127-163)||(35047093-35047129)
[»] chr6 (1 HSPs)
chr6 (126-185)||(8193290-8193349)
[»] chr2 (2 HSPs)
chr2 (126-183)||(36255796-36255853)
chr2 (127-185)||(36254951-36255009)
[»] chr3 (4 HSPs)
chr3 (127-186)||(53272478-53272537)
chr3 (127-185)||(34208551-34208609)
chr3 (136-186)||(53273283-53273333)
chr3 (127-185)||(34209500-34209558)
[»] scaffold0388 (2 HSPs)
scaffold0388 (127-184)||(13991-14048)
scaffold0388 (127-184)||(12942-12999)


Alignment Details
Target: chr1 (Bit Score: 136; Significance: 4e-71; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 19 - 185
Target Start/End: Complemental strand, 40057899 - 40057735
Alignment:
Q  19 caaaggcagaaagtcacagatatcacttacttagttgatgtacaagttggtaatagtcacaaaaacttttcttaattaaggagtaactacaatatgaatc 118  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  40057899 caaaggcagaaagtcacagatatcacttaattagttgaagtacaagttggtaatagtcacaaaaacttttcataattaaggagtaactacaatatgaatc 40057800  T
Q  119 ttgtcttggaaaattgttgttgacacatatgagaagattgagaaatatcaataaaagacgtaaatgc 185  Q
    ||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  40057799 ttgtcttg--aaattgttgttgacacatatgagaagaatgagaaatatcaataaaagacataaatgc 40057735  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 27115962 - 27115906
Alignment:
Q  127 gaaaattgttgttgacacatatgagaagattgagaaatatcaataaaagacgtaaat 183  Q
    ||||||||||||||||||||||||||||  ||||||| | || ||||||||||||||    
T  27115962 gaaaattgttgttgacacatatgagaaggctgagaaacaccagtaaaagacgtaaat 27115906  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 185
Target Start/End: Original strand, 27113975 - 27114034
Alignment:
Q  126 ggaaaattgttgttgacacatatgagaagattgagaaatatcaataaaagacgtaaatgc 185  Q
    ||||||||||||||||||||||||| |||  ||||||| |||| ||||||| ||||||||    
T  27113975 ggaaaattgttgttgacacatatgaaaaggctgagaaacatcagtaaaagatgtaaatgc 27114034  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 182
Target Start/End: Original strand, 40056689 - 40056745
Alignment:
Q  126 ggaaaattgttgttgacacatatgagaagattgagaaatatcaataaaagacgtaaa 182  Q
    ||||||||| ||||||||||||||||||   ||||||| |||| ||||||| |||||    
T  40056689 ggaaaattgatgttgacacatatgagaaagctgagaaacatcagtaaaagatgtaaa 40056745  T

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Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 127 - 186
Target Start/End: Original strand, 5330435 - 5330494
Alignment:
Q  127 gaaaattgttgttgacacatatgagaagattgagaaatatcaataaaagacgtaaatgct 186  Q
    ||||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||    
T  5330435 gaaaattgttgttgacacatatgagaaggctgagaaatatcagtaaaagacgtaaatgct 5330494  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 28629222 - 28629274
Alignment:
Q  131 attgttgttgacacatatgagaagattgagaaatatcaataaaagacgtaaat 183  Q
    |||||||| ||||||||||||||| |||||||| | || ||||||||||||||    
T  28629222 attgttgtcgacacatatgagaaggttgagaaacaccagtaaaagacgtaaat 28629274  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 5332729 - 5332671
Alignment:
Q  127 gaaaattgttgttgacacatatgagaagattgagaaatatcaataaaagacgtaaatgc 185  Q
    ||||||||||||||||||||||||||||  ||||||| | || ||||| | ||||||||    
T  5332729 gaaaattgttgttgacacatatgagaaggctgagaaacaccagtaaaaaatgtaaatgc 5332671  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 163
Target Start/End: Original strand, 35047093 - 35047129
Alignment:
Q  127 gaaaattgttgttgacacatatgagaagattgagaaa 163  Q
    ||||||||||||||||||||||||||||  |||||||    
T  35047093 gaaaattgttgttgacacatatgagaaggctgagaaa 35047129  T

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Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 126 - 185
Target Start/End: Complemental strand, 8193349 - 8193290
Alignment:
Q  126 ggaaaattgttgttgacacatatgagaagattgagaaatatcaataaaagacgtaaatgc 185  Q
    ||||||||||||||||||||||||||||| |||||||| | || ||||||||||||||||    
T  8193349 ggaaaattgttgttgacacatatgagaaggttgagaaacaccagtaaaagacgtaaatgc 8193290  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 183
Target Start/End: Complemental strand, 36255853 - 36255796
Alignment:
Q  126 ggaaaattgttgttgacacatatgagaagattgagaaatatcaataaaagacgtaaat 183  Q
    |||||||||||||||||||||||||||||  ||||||| | || ||||||||||||||    
T  36255853 ggaaaattgttgttgacacatatgagaaggctgagaaacaccagtaaaagacgtaaat 36255796  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 127 - 185
Target Start/End: Original strand, 36254951 - 36255009
Alignment:
Q  127 gaaaattgttgttgacacatatgagaagattgagaaatatcaataaaagacgtaaatgc 185  Q
    |||||||| |||||||||||||||||||  ||||||| | || ||||||||||||||||    
T  36254951 gaaaattgatgttgacacatatgagaaggctgagaaacaccagtaaaagacgtaaatgc 36255009  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 186
Target Start/End: Original strand, 53272478 - 53272537
Alignment:
Q  127 gaaaattgttgttgacacatatgagaagattgagaaatatcaataaaagacgtaaatgct 186  Q
    |||||||||| ||||||||||||| |||||||||||| | | |||||| |||||||||||    
T  53272478 gaaaattgttattgacacatatgataagattgagaaacaccgataaaaaacgtaaatgct 53272537  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 127 - 185
Target Start/End: Original strand, 34208551 - 34208609
Alignment:
Q  127 gaaaattgttgttgacacatatgagaagattgagaaatatcaataaaagacgtaaatgc 185  Q
    ||||||||||||||||||||||||||||  |||||||||  | ||||||| ||||||||    
T  34208551 gaaaattgttgttgacacatatgagaaggctgagaaatactagtaaaagatgtaaatgc 34208609  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 136 - 186
Target Start/End: Complemental strand, 53273333 - 53273283
Alignment:
Q  136 tgttgacacatatgagaagattgagaaatatcaataaaagacgtaaatgct 186  Q
    |||||||||||||||||||||||| ||| |||| ||||||||| |||||||    
T  53273333 tgttgacacatatgagaagattgaaaaacatcagtaaaagacggaaatgct 53273283  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 34209558 - 34209500
Alignment:
Q  127 gaaaattgttgttgacacatatgagaagattgagaaatatcaataaaagacgtaaatgc 185  Q
    |||||||| |||||||||||||||||||  | ||||| | || ||||||||||||||||    
T  34209558 gaaaattgatgttgacacatatgagaaggcttagaaacaccagtaaaagacgtaaatgc 34209500  T

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Target: scaffold0388 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 184
Target Start/End: Complemental strand, 14048 - 13991
Alignment:
Q  127 gaaaattgttgttgacacatatgagaagattgagaaatatcaataaaagacgtaaatg 184  Q
    ||||||||||||||||| ||||||||||| ||||||| | || ||||||| |||||||    
T  14048 gaaaattgttgttgacatatatgagaagactgagaaacaccagtaaaagatgtaaatg 13991  T

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Target: scaffold0388; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 127 - 184
Target Start/End: Original strand, 12942 - 12999
Alignment:
Q  127 gaaaattgttgttgacacatatgagaagattgagaaatatcaataaaagacgtaaatg 184  Q
    ||||| ||||||||||||| ||||||||  ||| |||||||  |||||||||||||||    
T  12942 gaaaaatgttgttgacacaaatgagaaggctgaaaaatatcggtaaaagacgtaaatg 12999  T

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