View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13622_low_3 (Length: 669)
Name: NF13622_low_3
Description: NF13622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13622_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 560; Significance: 0; HSPs: 15)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 19 - 659
Target Start/End: Original strand, 9675740 - 9676376
Alignment:
| Q |
19 |
cccggtgcattcggaaatctgaaaggacaaagataagtatcttttgaaaaacattaaccataatcacttggttacaaatcaaggcaaatacatgaaactg |
118 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||| | |
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|
| T |
9675740 |
cccggtgcattcggaaatctgaaagaacaaagataagtatcttttgaaaaatattaaccataatcacttgattacaaatcagggcaaatacatgaaacag |
9675839 |
T |
|
| Q |
119 |
cgtgaataagaactcgccttccaacagctgagctgtattgagctaaacgatgaaaatctaccatggctatagaatacagaagaatgctgttgaagacaat |
218 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9675840 |
cgtgaataagaactcgcctttcaacagctgagctgtattgagctaaacgatgaaaatctaccatggctatagaatacagaagaatgctgttgaagacaat |
9675939 |
T |
|
| Q |
219 |
gaactttatcttagtgtactgacgctggtcaacaggttacgcatgtactataaacagttattgagtttaacaaaattccttcaaaaataccaatgaaaca |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
9675940 |
gaactttatcttagtgtactgacgctggtcaacaggttacgcatgcactataaacagttattaggtttaacaaaattccttcaaaaataccaatgaaaca |
9676039 |
T |
|
| Q |
319 |
taaaacgagattgtactcttcattgcataagaaggtgatcaatttaacttttttaaagaacatagtacacttcattgtataatttatattgttgcacttg |
418 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9676040 |
taaaacgagatagtactcttcattgcataagaaggt----aatttaacttttttaaagaacatagtacacttcattgtataatttatattgttgcacttg |
9676135 |
T |
|
| Q |
419 |
gcaaatacatttttcaaacactggacatacagagattatgaatgctgctttgaaatgacacaaatgcagatttgtattttgtttccaaatcctcacgcta |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9676136 |
gcaaatacatttttcaaacactggacatacagagattatgaatgctgctttgaaatgacacaaatgcagatttgtattttgtttccaaatcctcacgcta |
9676235 |
T |
|
| Q |
519 |
tcaaacgaatctgttacgatggttttaactccaactccaaaccttacttatcaaggtcacaggtgtgaaagttctaaacgtcgactccaaaccttactta |
618 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||| |
|
|
| T |
9676236 |
tcaaacaaatctgttacgatggttttaactccaactccaaaccttacttatcaaggtcacagttgtgaaagttctaaacctcaactccaaaccttactta |
9676335 |
T |
|
| Q |
619 |
tcaaggcatcgtagaactctgaatgctttttactatctgtg |
659 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
9676336 |
tcaaggcattgtagaactctgaatgctttttactatttgtg |
9676376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 171 - 500
Target Start/End: Original strand, 10213488 - 10213821
Alignment:
| Q |
171 |
aaaatctaccatggctatagaatacagaagaatgctgttgaagacaatga-actttatcttagtgtactgacgctggtcaacaggttacgcatgtactat |
269 |
Q |
| |
|
||||||||||||||||||||| |||| |||||| ||||||||||||||| | |||||| |||||||||||| ||||||||| ||||| ||||| ||||| |
|
|
| T |
10213488 |
aaaatctaccatggctatagagtacaaaagaattttgttgaagacaatgagagtttatcatagtgtactgacactggtcaaccggttatgcatgcactat |
10213587 |
T |
|
| Q |
270 |
aaacagttattgagtttaacaaaattccttcaaaaataccaatgaaacataaaacgagattgtactcttcattgcataagaaggtgatcaatttaacttt |
369 |
Q |
| |
|
||||||||||| |||||||| ||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10213588 |
aaacagttattaggtttaacataattcattcaaaaataccaatgaaatataaaacgagatagtactcttcattgcataagaaggtgatcaatttaacttt |
10213687 |
T |
|
| Q |
370 |
tttaaagaacatagtacacttcattgtataatttatattgttgcacttggcaaatacatt-tttcaaacactggacatacagagattatgaatgctgctt |
468 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| || |||| |||| || |||||| | | |||||||||||||| |
|
|
| T |
10213688 |
tttaaagaacatagtacacttcatcgtataattcatattgttgcacttggcaaatactttatttctaacattgagcatacacaaagtatgaatgctgctt |
10213787 |
T |
|
| Q |
469 |
tgaaatgac--acaaatgcagatttgtattttgt |
500 |
Q |
| |
|
||||||| ||||||||||||| ||||||| |
|
|
| T |
10213788 |
caaaatgacttgtaaatgcagatttgcattttgt |
10213821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 301 - 425
Target Start/End: Complemental strand, 10102535 - 10102410
Alignment:
| Q |
301 |
aaaaataccaatgaaacataaaacgagattgtactcttcattgcataagaaggtgatcaatttaactt-ttttaaagaacatagtacacttcattgtata |
399 |
Q |
| |
|
|||||||||||||||| || ||||||||| ||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
10102535 |
aaaaataccaatgaaatatgaaacgagatagtactcttcattgcacaagaaggtgatcagtttaactttttttaaagaacatagtacaattcattgtata |
10102436 |
T |
|
| Q |
400 |
atttatattgttgcacttggcaaata |
425 |
Q |
| |
|
||| |||||||||||||||||||||| |
|
|
| T |
10102435 |
attcatattgttgcacttggcaaata |
10102410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 171 - 438
Target Start/End: Original strand, 12105610 - 12105852
Alignment:
| Q |
171 |
aaaatctaccatggctatagaatacagaagaatgctgttgaagacaatga-actttatcttagtgtactgacgctggtcaacaggttacgcatgtactat |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||| |||||||| | ||| ||||| ||||| |
|
|
| T |
12105610 |
aaaatctaccatggctatagaatacagaaga------ttgaagacaatgagactttattttagtgtactgacgttggtcaactgcttatgcatgcactat |
12105703 |
T |
|
| Q |
270 |
aaacagttattgagtttaacaaaattccttcaaaaataccaatgaaacataaaacgagattgtactcttcattgcataagaaggtgatcaatttaacttt |
369 |
Q |
| |
|
|| |||||||| ||| |||||||| |||| || ||| ||||| ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
12105704 |
aa-cagttatt-------------------caagaataccaacgaaagatgaaatgagatagtactcttcattgcacaagaaggtgatcaatttaacttt |
12105783 |
T |
|
| Q |
370 |
tttaaagaacatagtacacttcattgtataatttatattgttgcacttggcaaatacatttttcaaaca |
438 |
Q |
| |
|
|| ||||| ||||| ||||||||||||| |||| ||||||||| |||||||||| || |||||| |||| |
|
|
| T |
12105784 |
ttcaaagagcatagaacacttcattgtacaattcatattgttgaacttggcaaacacttttttctaaca |
12105852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 209 - 418
Target Start/End: Original strand, 9677479 - 9677677
Alignment:
| Q |
209 |
tgaagacaatga-actttatcttagtgtactgacgctggtcaacaggttacgcatgtactataaacagttattgagtttaacaaaattccttcaaaaata |
307 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||||||||| ||||| ||||| ||||| |||||||||| |||||| || | ||| ||||| |||| |
|
|
| T |
9677479 |
tgaagacaatgtgactttatcttagtgtactgatgctggtcaactggttatgcatgcactat-aacagttattaagtttagcatacttcattcaagaata |
9677577 |
T |
|
| Q |
308 |
ccaatgaaacataaaacgagattgtactcttcattgcataagaaggtgatcaatttaacttttttaaagaacatagtacacttcattgtataatttatat |
407 |
Q |
| |
|
||||||||| || ||| ||||| ||||| ||||||||||||||||||||||||||||| | ||||| ||||||||||||| |||| |||| |
|
|
| T |
9677578 |
ccaatgaaagatgaaatgagat----------attgcgcaagaaggtgatcaatttaacttttttaaa-agcatagaacacttcattgtacaattcatat |
9677666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 171 - 378
Target Start/End: Original strand, 9684234 - 9684439
Alignment:
| Q |
171 |
aaaatctaccatggctatagaatacagaagaatgctgttgaagacaatgaa-ctttatcttagtgtactgacgctggtcaacaggttacgcatgtactat |
269 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||| ||||||||||||| || | ||||||||||||||| |||| ||||||| ||| ||||| || || |
|
|
| T |
9684234 |
aaaatctaccatggctatagcatacaaaagaatcctgttgaagacaaagaggccttatcttagtgtacttacgcaagtcaacaaattatgcatgcacaat |
9684333 |
T |
|
| Q |
270 |
aaacagttattgagtttaacaaaattccttcaaaaataccaatgaaacataaaacgagattgtactcttcattgcataagaaggtgatcaatttaacttt |
369 |
Q |
| |
|
|||||||| | | | ||| | || ||||||||||||| ||||| || |||| |||| |||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
9684334 |
aaacagtt---gggctatacatactttattcaaaaataccattgaaaaatcaaacaagatagtactcttcattgcatgagaaggtgatcgatttaacttt |
9684430 |
T |
|
| Q |
370 |
tttaaagaa |
378 |
Q |
| |
|
|| |||||| |
|
|
| T |
9684431 |
ttcaaagaa |
9684439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 22 - 145
Target Start/End: Original strand, 9677350 - 9677476
Alignment:
| Q |
22 |
ggtgcattcggaaatctgaaaggacaaagataagtatcttttgaaaaacattaaccata---atcacttggttacaaatcaaggcaaatacatgaaactg |
118 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||| | | ||||||||||||| | |||||| | |
|
|
| T |
9677350 |
ggtgcattcggaaaccggaaaggacaaagataagtatcttttgaaaaacattaaccataatcatcacttgataaaaaatcaaggcaaaaatgtgaaaccg |
9677449 |
T |
|
| Q |
119 |
cgtgaataagaactcgccttccaacag |
145 |
Q |
| |
|
|||| ||||||||| ||||||||||| |
|
|
| T |
9677450 |
tgtgagtaagaactcaccttccaacag |
9677476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 40 - 169
Target Start/End: Original strand, 10213303 - 10213432
Alignment:
| Q |
40 |
aaaggacaaagataagtatcttttgaaaaacattaaccataatcacttggttacaaatcaaggcaaatacatgaaactgcgt-gaataagaactcgcctt |
138 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||| || | ||||||| ||| ||||| |||||||||| ||||| | || |||||||||||| |||| |
|
|
| T |
10213303 |
aaaggacaaagataagtatctttttaaaaatattaatcaga-tcacttgattaaaaatcctggcaaatacacgaaacagtgttgaataagaactcacctt |
10213401 |
T |
|
| Q |
139 |
ccaacagctgagctgtattgagctaaacgat |
169 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |
|
|
| T |
10213402 |
ccaaccgctgagctgtattgagctaaacgat |
10213432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 171 - 271
Target Start/End: Complemental strand, 13855500 - 13855399
Alignment:
| Q |
171 |
aaaatctaccatggctatagaatacagaagaatgctgttgaagacaatga-actttatcttagtgtactgacgctggtcaacaggttacgcatgtactat |
269 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||||||||||||| | ||||||||||||||||||| ||||||||| ||||| |||| ||||| |
|
|
| T |
13855500 |
aaaatctaccatggatatagaatacagaagaatcatgttgaagacaatgagaatttatcttagtgtactgacactggtcaactggttatacatgcactat |
13855401 |
T |
|
| Q |
270 |
aa |
271 |
Q |
| |
|
|| |
|
|
| T |
13855400 |
aa |
13855399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 169
Target Start/End: Original strand, 12105489 - 12105554
Alignment:
| Q |
104 |
aaatacatgaaactgcgtgaataagaactcgccttccaacagctgagctgtattgagctaaacgat |
169 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||||| ||||||||| ||||||| ||||||| |
|
|
| T |
12105489 |
aaatacatgaaacagcgtgaataagaactcaccttccaagagctgagctttattgagagaaacgat |
12105554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 171 - 274
Target Start/End: Original strand, 10211310 - 10211414
Alignment:
| Q |
171 |
aaaatctaccatggctatagaatacagaagaatgctgttgaagacaatga-actttatcttagtgtactgacgctggtcaacaggttacgcatgtactat |
269 |
Q |
| |
|
|||||| ||||||||||||| ||||| |||||| |||||||||||| || ||||| |||||||||||||||| |||||||| | || |||| ||||| |
|
|
| T |
10211310 |
aaaatcaaccatggctatagtatacaaaagaatcttgttgaagacaaagaggctttaccttagtgtactgacgcaggtcaacaagctatgcatacactat |
10211409 |
T |
|
| Q |
270 |
aaaca |
274 |
Q |
| |
|
||||| |
|
|
| T |
10211410 |
aaaca |
10211414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 9684130 - 9684178
Alignment:
| Q |
121 |
tgaataagaactcgccttccaacagctgagctgtattgagctaaacgat |
169 |
Q |
| |
|
||||||||||||| ||||||||| | ||||||||||||||||||||||| |
|
|
| T |
9684130 |
tgaataagaactcaccttccaaccgatgagctgtattgagctaaacgat |
9684178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 459 - 536
Target Start/End: Original strand, 12108062 - 12108142
Alignment:
| Q |
459 |
aatgctgctttgaaatgacaca--aatgcagatttgta-ttttgtttccaaatcctcacgctatcaaacgaatctgttacg |
536 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||| ||||||| | |||||||||| | || |||| ||||||||||| |
|
|
| T |
12108062 |
aatgctgctttgaaatgactcatgaatgcagatttgtatttttgttcctaaatcctcacaccattaaaccaatctgttacg |
12108142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 12105444 - 12105491
Alignment:
| Q |
22 |
ggtgcattcggaaatctgaaaggacaaagataagtatcttttgaaaaa |
69 |
Q |
| |
|
|||||||||||||| | |||||||||||| ||| |||||||||||||| |
|
|
| T |
12105444 |
ggtgcattcggaaaccggaaaggacaaagttaattatcttttgaaaaa |
12105491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 119 - 169
Target Start/End: Original strand, 10211204 - 10211254
Alignment:
| Q |
119 |
cgtgaataagaactcgccttccaacagctgagctgtattgagctaaacgat |
169 |
Q |
| |
|
||||||||||| ||| ||||| ||||| ||||||| ||||||||||||||| |
|
|
| T |
10211204 |
cgtgaataagagctcaccttctaacagatgagctgcattgagctaaacgat |
10211254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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