View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13622_low_5 (Length: 625)
Name: NF13622_low_5
Description: NF13622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13622_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 18 - 617
Target Start/End: Original strand, 24398915 - 24399498
Alignment:
| Q |
18 |
aaagattggatgtcaagcaagaaggtatgatctatgttctgttcctaaaaaataccaaattgtcataaaaatttctagcatgtaaaactaatgtgaagaa |
117 |
Q |
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| T |
24398915 |
aaagattggatgtcaagcaagaaggtatgatctatgttctgttcctacaaaataccaaattgtcataaaaatttctagcatgtaaaactaatgtgaagaa |
24399014 |
T |
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| Q |
118 |
aatatgtatatgtgaagcaactaataacgaaataatttactttgatataggctccactacctgcaatagcattgctttcaagtgcagaaattgttcatga |
217 |
Q |
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| T |
24399015 |
aatatgtacatgtgaagcaactaataacgaaataatttactttgatataggctccactgcctgcaatagcattgctttcaagtgcagaaattgttcatga |
24399114 |
T |
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| Q |
218 |
gcctttgggtctcgtcctcattatttcatcttggaatttgccctttggtgagttagttatatactacaatacttcttgctttgaaccaaaatcacagtca |
317 |
Q |
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| T |
24399115 |
gcctttgggtctcgtcctcattatttcatcttggaatttgccctttggtgagttagttatatactacaatacttcttgctttgaaccaaaatcacagtca |
24399214 |
T |
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| Q |
318 |
ttcaattactagataaagttgaaacaacgacaaaaatttagagacggaaaattggaaatctgattctaattccgtagttaagtgttagagatgcaaaatt |
417 |
Q |
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| T |
24399215 |
ttcaattactagataaagttgaaacaacgacaaaaatttagagacggaaaattggaaatctgattctaatttcgtagttaagtgttagagatgcgaaatt |
24399314 |
T |
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| Q |
418 |
taccgaccaactttaannnnnnnngcgtataannnnnnncgttattttgttagagtcttcatagatttgagctcgtaatataatattttgtaacctatnn |
517 |
Q |
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| T |
24399315 |
taccgaccaacttta----------------atttttttcgttattttgttagagtcttcatagatttgagctcgtaacataatattttgtaacctataa |
24399398 |
T |
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| Q |
518 |
nnnnncacaggagtgtctttggagccactgataggagctatagctgctggaaatgcagcagtgttaaaaccttcagagttgtctcctgcatgttcttctc |
617 |
Q |
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| T |
24399399 |
aaaaacacaggagtgtctttggagccactgataggagctatagctgctggaaatgcagcagtgttaaaaccttcagagttgtctcctgcatgttcttctc |
24399498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 182 - 270
Target Start/End: Original strand, 41842931 - 41843019
Alignment:
| Q |
182 |
aatagcattgctttcaagtgcagaaattgttcatgagcctttgggtctcgtcctcattatttcatcttggaatttgccctttggtgagt |
270 |
Q |
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| T |
41842931 |
aatagcactactttcaagtgcagaaattgttgctgagcctcttggtctagtcctcataatctcatcatggaattttccctttggtgagt |
41843019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 524 - 598
Target Start/End: Original strand, 41843117 - 41843191
Alignment:
| Q |
524 |
acaggagtgtctttggagccactgataggagctatagctgctggaaatgcagcagtgttaaaaccttcagagttg |
598 |
Q |
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|||||| |||| ||||||||| | || ||||| |||||||||||||||| ||||| ||||||||||||||||| |
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| T |
41843117 |
acaggactgtccttggagccattaattggagccatagctgctggaaatgttgcagtcctaaaaccttcagagttg |
41843191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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