View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13623_high_10 (Length: 238)
Name: NF13623_high_10
Description: NF13623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13623_high_10 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 42822895 - 42823116
Alignment:
| Q |
18 |
ccaaagatgtaccataataaatagtaacgtaactaaaatctgctattcattgaatatgagaatatcttggacacccaaattaaatgcaatacaaaatgaa |
117 |
Q |
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| T |
42822895 |
ccaaagatgtaccataataaatactaacgtaactaaaatctgatattcattgaatatgagaatatcttggacacccaaattaaatgcaatacaaaatgaa |
42822994 |
T |
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| Q |
118 |
tggcccaaattagatagatattggtaaagaggacttatgccttatctgtg-ccccaacaaccaactcatagaaaaattgaccctaatagtacaacagcat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42822995 |
tggcccaaattagatagatattggtaaagaggacttatgccttatctgtgcccccaacaaccaactcatagaaaaattgaccctaatagtacaacagcat |
42823094 |
T |
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| Q |
217 |
ttaatccactaataacaaactc |
238 |
Q |
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| T |
42823095 |
ttaatccactaataacaaactc |
42823116 |
T |
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