View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13623_high_12 (Length: 205)
Name: NF13623_high_12
Description: NF13623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13623_high_12 |
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| [»] chr1 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 8e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 8e-97
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 39198475 - 39198661
Alignment:
| Q |
19 |
attcggttatagatcagagagaacggcttgtgaattcttagcatcaaaggggatatgacagtaagctggacagacacttccaaaccaagcaaatgcaaac |
118 |
Q |
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| T |
39198475 |
attcggttatagatcagagagaacgacttgtgaattcttagcatcaaaggggatatgacagtaagctggacagacacgtccaaaccaagcaaatgcaaac |
39198574 |
T |
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| Q |
119 |
aattattgcttgcataggcaagcacacaacgtaaaccatgtaccattagccaatgtgtagtgtattaattggtactcatttaattcc |
205 |
Q |
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| T |
39198575 |
aattattgcttgcataggcaagcacacaacgtaaaccatgtaccattagccaatgtgtagtgtattaattggtactcatttaattcc |
39198661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 205
Target Start/End: Complemental strand, 52132443 - 52132313
Alignment:
| Q |
70 |
gatatgacagtaagctggacagacacttccaaaccaagcaaatgcaaacaattattgcttgcataggcaagcacacaacgt-aaaccatgtaccattagc |
168 |
Q |
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|||||||||||||||||||||||||| || |||||||| |||||||| |||| | ||| || ||||||||||||| ||||||| |||||||||| |
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| T |
52132443 |
gatatgacagtaagctggacagacacgtcgaaaccaaggcaatgcaaatggttataa-taacatcggaaagcacacaacgtgaaaccatttaccattagc |
52132345 |
T |
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| Q |
169 |
caatgtgtagtgtattaattggtactcatttaattcc |
205 |
Q |
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| T |
52132344 |
caatgtgta-----ttaactggtactcatttaattcc |
52132313 |
T |
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