View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13623_high_5 (Length: 279)
Name: NF13623_high_5
Description: NF13623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13623_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 104 - 265
Target Start/End: Original strand, 19175457 - 19175618
Alignment:
| Q |
104 |
tatcagtagcagttaacaatagtttttccactgtaaccgacggtgaggcagaggaaattactgtaacagagagggaaaaaacagagcaagagatatcctt |
203 |
Q |
| |
|
||||||||||||| ||||| |||||||| ||||| |||||| | ||||||||||| || |||||||||||||||| ||| |||||||||||| ||||||| |
|
|
| T |
19175457 |
tatcagtagcagtaaacaagagtttttctactgtcaccgactgcgaggcagaggagatcactgtaacagagagggcaaagacagagcaagagttatcctt |
19175556 |
T |
|
| Q |
204 |
tttggccattctcgtgacccttttcaggaaatccctagtttcttgcgctagtgatgcttctg |
265 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
19175557 |
tttggccattcttgtgacccttttcaggaaatccctagtttcttgcgccagtgatgcttctg |
19175618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 19175348 - 19175411
Alignment:
| Q |
1 |
atggctgaagttctacactcttctgatcccattcacattcacactaccgaccaacaacaacaac |
64 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
19175348 |
atggctgaagttctacactcttctgatcccattcacattcacactaccgaccaagaacaacaac |
19175411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University