View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13623_high_8 (Length: 271)
Name: NF13623_high_8
Description: NF13623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13623_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 17 - 254
Target Start/End: Original strand, 41045475 - 41045712
Alignment:
| Q |
17 |
aatatggtcggttaagcagaaaaaattccatcaaactacatcaggaaaccaaaacaaatatacatatcaattagaatttccaccctcagtcactggttta |
116 |
Q |
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| T |
41045475 |
aatatggtcggttaagcagaaaaaattccatcaaactacatcaggaaaccaaaacaaatatacatatcaattagaatttccaccctcagtcactggttta |
41045574 |
T |
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| Q |
117 |
tcagacaataattatccattgatttggaaactgaacttcgttctaactacaacacgcctccaaaagtccacccaacaccccaaagacctgcactgttaaa |
216 |
Q |
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| T |
41045575 |
tcagacaataattatccattgatttggaaactgaacttcgttcaaactacaacacgcctccaaaagtccacccaacaccccaaagacctgcactgttaaa |
41045674 |
T |
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| Q |
217 |
tcccaaggcattcattggcctgtaccatccaatgaaat |
254 |
Q |
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| T |
41045675 |
tcccaaggcattcattggcctgtaccatccaattaaat |
41045712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 147 - 254
Target Start/End: Complemental strand, 21241810 - 21241703
Alignment:
| Q |
147 |
ctgaacttcgttctaactacaacacgcctccaaaagtccacccaacaccccaaagacctgcactgttaaatcccaaggcattcattggcctgtaccatcc |
246 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
21241810 |
ctgaacttcgttctaactacaacacgcctccaaaagtccacccaacaccccaaagacctgctctgttaaatcccaaggcattcattggcctgtaccatcc |
21241711 |
T |
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| Q |
247 |
aatgaaat |
254 |
Q |
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| T |
21241710 |
aattaaat |
21241703 |
T |
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