View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13623_low_11 (Length: 247)

Name: NF13623_low_11
Description: NF13623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13623_low_11
NF13623_low_11
[»] chr7 (18 HSPs)
chr7 (29-230)||(21651669-21651870)
chr7 (95-173)||(21681249-21681327)
chr7 (94-173)||(21740673-21740752)
chr7 (94-173)||(21627748-21627827)
chr7 (29-147)||(21663643-21663753)
chr7 (94-155)||(21713827-21713888)
chr7 (174-230)||(21791745-21791801)
chr7 (94-161)||(21784568-21784635)
chr7 (29-144)||(21622637-21622744)
chr7 (32-90)||(21791367-21791425)
chr7 (174-230)||(21689135-21689191)
chr7 (99-173)||(21704305-21704378)
chr7 (94-160)||(21725573-21725639)
chr7 (102-147)||(21784691-21784736)
chr7 (94-146)||(21991409-21991461)
chr7 (102-160)||(21771645-21771703)
chr7 (174-212)||(21787954-21787992)
chr7 (94-155)||(21639323-21639384)
[»] scaffold0182 (1 HSPs)
scaffold0182 (94-160)||(34211-34277)


Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 29 - 230
Target Start/End: Original strand, 21651669 - 21651870
Alignment:
Q  29 agcaagaaatagaaggagaatctgcatgaaacacatagttaaattctagaacagtaaaagcattgaagcaaagatcctttttccatggattttacatttc 128  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  21651669 agcaagaaatagaaggagaagctgcatgaaacacatagttaaattctagaacagtaaaagcattgaagcaaagatcctttttccatgaattttacatttc 21651768  T
Q  129 ttgtccattgagtaaagtggtagacattatatagtttgttctgagagaggacatgtataaaaatcgattaaagtggaagtgtaatatattaagtaagcat 228  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  21651769 ttgtccattgagtaaagtggtagacattatatagtttgtcctgagagaggacatgtataaaaatcgattaaagtggaagtgtaatattttaagcaagcat 21651868  T
Q  229 at 230  Q
    ||    
T  21651869 at 21651870  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 95 - 173
Target Start/End: Original strand, 21681249 - 21681327
Alignment:
Q  95 agcaaagatcctttttccatggattttacatttcttgtccattgagtaaagtggtagacattatatagtttgttctgag 173  Q
    |||||||||||  |||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  21681249 agcaaagatccaatttccatgaattttacttttcttgtccattgagtaaagtgatagacattatatagtttgttctgag 21681327  T

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Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 94 - 173
Target Start/End: Original strand, 21740673 - 21740752
Alignment:
Q  94 aagcaaagatcctttttccatggattttacatttcttgtccattgagtaaagtggtagacattatatagtttgttctgag 173  Q
    |||||| ||||||||||||||| ||||||| ||||||||||||||||||||||| | |||||||||||||||||| ||||    
T  21740673 aagcaatgatcctttttccatgaattttacttttcttgtccattgagtaaagtgatggacattatatagtttgttatgag 21740752  T

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Target: chr7; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 94 - 173
Target Start/End: Original strand, 21627748 - 21627827
Alignment:
Q  94 aagcaaagatcctttttccatggattttacatttcttgtccattgagtaaagtggtagacattatatagtttgttctgag 173  Q
    |||||| |||||| |||||||| ||||||| |||||||||| |||||||||||| | |||||||||||||||||||||||    
T  21627748 aagcaacgatcctatttccatgaattttacttttcttgtccgttgagtaaagtgatggacattatatagtttgttctgag 21627827  T

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Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 29 - 147
Target Start/End: Original strand, 21663643 - 21663753
Alignment:
Q  29 agcaagaaatagaaggagaatctgcatgaaacacatagttaaattctagaacagtaaaagcattgaagcaaagatcctttttccatggattttacatttc 128  Q
    ||||||||||| |||||||| | |||||   ||||||||||||||||||||||||||        |||||| |||||| |||||||| ||||||| ||||    
T  21663643 agcaagaaataaaaggagaagccgcatggtgcacatagttaaattctagaacagtaa--------aagcaatgatcctatttccatgaattttacttttc 21663734  T
Q  129 ttgtccattgagtaaagtg 147  Q
    |||||||||||| ||||||    
T  21663735 ttgtccattgagcaaagtg 21663753  T

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Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 94 - 155
Target Start/End: Original strand, 21713827 - 21713888
Alignment:
Q  94 aagcaaagatcctttttccatggattttacatttcttgtccattgagtaaagtggtagacat 155  Q
    ||||||||||| |||||||||| ||||||| ||||||||||||||||||||| ||| |||||    
T  21713827 aagcaaagatcttttttccatgaattttacttttcttgtccattgagtaaagcggtggacat 21713888  T

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Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 174 - 230
Target Start/End: Original strand, 21791745 - 21791801
Alignment:
Q  174 agaggacatgtataaaaatcgattaaagtggaagtgtaatatattaagtaagcatat 230  Q
    |||||||| ||||||||||| ||||||||||||||||||||| ||||| ||||||||    
T  21791745 agaggacaggtataaaaatcaattaaagtggaagtgtaatattttaagcaagcatat 21791801  T

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Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 94 - 161
Target Start/End: Original strand, 21784568 - 21784635
Alignment:
Q  94 aagcaaagatcctttttccatggattttacatttcttgtccattgagtaaagtggtagacattatata 161  Q
    ||||||| ||||||||||| || ||||||| ||||||||||| ||||||||||| | |||||||||||    
T  21784568 aagcaaatatcctttttccgtgaattttacttttcttgtccaatgagtaaagtgatggacattatata 21784635  T

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Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 144
Target Start/End: Original strand, 21622637 - 21622744
Alignment:
Q  29 agcaagaaatagaaggagaatctgcatgaaacacatagttaaattctagaacagtaaaagcattgaagcaaagatcctttttccatggattttacatttc 128  Q
    ||||||||||| |||||||| | |||||  ||||||||||||||| ||||||||| |        |||||||||| || |||||||| ||||||| ||||    
T  21622637 agcaagaaataaaaggagaagccgcatggtacacatagttaaattgtagaacagtga--------aagcaaagatactatttccatgaattttacttttc 21622728  T
Q  129 ttgtccattgagtaaa 144  Q
    |||||||| |||||||    
T  21622729 ttgtccatcgagtaaa 21622744  T

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Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 90
Target Start/End: Original strand, 21791367 - 21791425
Alignment:
Q  32 aagaaatagaaggagaatctgcatgaaacacatagttaaattctagaacagtaaaagca 90  Q
    ||||||||||||||||| |||||||  ||||||  ||||||||||||||||||||||||    
T  21791367 aagaaatagaaggagaagctgcatggcacacatgattaaattctagaacagtaaaagca 21791425  T

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Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 230
Target Start/End: Original strand, 21689135 - 21689191
Alignment:
Q  174 agaggacatgtataaaaatcgattaaagtggaagtgtaatatattaagtaagcatat 230  Q
    |||||||| |||||||||||  |||||||||||||||||||| ||||| ||||||||    
T  21689135 agaggacaggtataaaaatcatttaaagtggaagtgtaatattttaagcaagcatat 21689191  T

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Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 99 - 173
Target Start/End: Original strand, 21704305 - 21704378
Alignment:
Q  99 aagatcctttttccatggattttacatttcttgtccattgagtaaagtggtagacattatatagtttgttctgag 173  Q
    |||||||| |||||  | ||||||| |||||||| |||||||||||||| | ||||||||||| |||||||||||    
T  21704305 aagatcctgtttccgagaattttacttttcttgtacattgagtaaagtgatggacattatata-tttgttctgag 21704378  T

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Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 94 - 160
Target Start/End: Original strand, 21725573 - 21725639
Alignment:
Q  94 aagcaaagatcctttttccatggattttacatttcttgtccattgagtaaagtggtagacattatat 160  Q
    ||||||| ||||||||||  || ||||||| ||||||||||| ||||||||||| | ||||||||||    
T  21725573 aagcaaatatcctttttctgtgaattttacttttcttgtccaatgagtaaagtgatggacattatat 21725639  T

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Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 147
Target Start/End: Original strand, 21784691 - 21784736
Alignment:
Q  102 atcctttttccatggattttacatttcttgtccattgagtaaagtg 147  Q
    ||||||||||| || ||||||| |||||||||||||||||||||||    
T  21784691 atcctttttccgtgaattttacttttcttgtccattgagtaaagtg 21784736  T

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Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 146
Target Start/End: Original strand, 21991409 - 21991461
Alignment:
Q  94 aagcaaagatcctttttccatggattttacatttcttgtccattgagtaaagt 146  Q
    ||||||| |||||||||||||| |||| || ||||||||| ||||||||||||    
T  21991409 aagcaaatatcctttttccatgaatttcacttttcttgtctattgagtaaagt 21991461  T

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Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 160
Target Start/End: Original strand, 21771645 - 21771703
Alignment:
Q  102 atcctttttccatggattttacatttcttgtccattgagtaaagtggtagacattatat 160  Q
    ||||||||||  || ||||||| ||||||||||| ||||||||||| | ||||||||||    
T  21771645 atcctttttctgtgaattttacttttcttgtccaatgagtaaagtgatggacattatat 21771703  T

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Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 212
Target Start/End: Original strand, 21787954 - 21787992
Alignment:
Q  174 agaggacatgtataaaaatcgattaaagtggaagtgtaa 212  Q
    |||||||| |||||||||||||||||||| |||||||||    
T  21787954 agaggacaggtataaaaatcgattaaagttgaagtgtaa 21787992  T

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Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 155
Target Start/End: Original strand, 21639323 - 21639384
Alignment:
Q  94 aagcaaagatcctttttccatggattttacatttcttgtccattgagtaaagtggtagacat 155  Q
    ||||||||||||||||| |||  ||||||| | | |||| |||||||||||||||| |||||    
T  21639323 aagcaaagatccttttttcattaattttacttattttgtacattgagtaaagtggtggacat 21639384  T

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Target: scaffold0182 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 94 - 160
Target Start/End: Original strand, 34211 - 34277
Alignment:
Q  94 aagcaaagatcctttttccatggattttacatttcttgtccattgagtaaagtggtagacattatat 160  Q
    ||||||| ||||||||||  || ||||||| ||||||||||| ||||||||||| | ||||||||||    
T  34211 aagcaaatatcctttttctgtgaattttacttttcttgtccaatgagtaaagtgatggacattatat 34277  T

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