View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13623_low_4 (Length: 421)
Name: NF13623_low_4
Description: NF13623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13623_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 10 - 405
Target Start/End: Original strand, 39711080 - 39711476
Alignment:
| Q |
10 |
catcatcacctaccaaaattaaaaacactagcatacaattaacaacaatacataattgatggaaacatgtgttgccaaccccatcacccttagtcatcta |
109 |
Q |
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| T |
39711080 |
catcaccacctaccaaaattaaaaacactagcatacaattaacaacaatacataattgatggaaacatgtgttgccaaccccatcacccttagtcatcta |
39711179 |
T |
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| Q |
110 |
cgaaacggacacaaaactaaaagcatccctctttcatgctctttcattttcttattacttataaaa-acctaaataatacaatcatgcaccacacctacc |
208 |
Q |
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| T |
39711180 |
cgaaacggacacaaaactaaaagcatccctctttcatgctctttcattttcttattacttaaaaaaaacctaaataatacaatcatgcaccacacctacc |
39711279 |
T |
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| Q |
209 |
acacattaacatcaagccgcaatatcatgacgaatgtgtttgagtatcaccggaataacaacgtccggcgaacttaattgcggcaaatgaccctctgtcg |
308 |
Q |
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| T |
39711280 |
acacattaacatcaagccgcaatatcatgacgaatgtgtttgagtatcaccggaataacaacgtccggcgaacttaattgtggcaaatgaccctctgtcg |
39711379 |
T |
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| Q |
309 |
acataacctccacgatggactcgctaccaacatgttggtggagatactccgcgaccacgactggaactgctagatccttcatactttgtataatgtg |
405 |
Q |
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| T |
39711380 |
acataacctccacgatggactcgctaccaacatgttggtggagatactccgcgaccacgaccggaactgctagatccttcatactttgtataatgtg |
39711476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 359
Target Start/End: Complemental strand, 5738141 - 5738039
Alignment:
| Q |
257 |
accggaataacaacgtccggcgaacttaattgcggcaaatgaccctctgtcgacataacctccacgatggactcgctaccaacatgttggtggagatact |
356 |
Q |
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||||||||||||| ||||| || ||||| |||||||||||||| ||||||| ||| ||||| || ||||||| | ||| | |||||||| ||||||| |
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| T |
5738141 |
accggaataacaatatccggtgagcttaactgcggcaaatgaccatctgtcgtcatgacctcaacaatggactgaccacccaagtgttggtgaagatact |
5738042 |
T |
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| Q |
357 |
ccg |
359 |
Q |
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||| |
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| T |
5738041 |
ccg |
5738039 |
T |
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