View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13623_low_5 (Length: 340)
Name: NF13623_low_5
Description: NF13623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13623_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 8e-83; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 40407240 - 40407395
Alignment:
| Q |
1 |
ccgtcgctatcgctttccatttctccatcaagacttaatccttcaattcttgctccaataggatctcctagcattcccacttctattttttccaaaaaca |
100 |
Q |
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| T |
40407240 |
ccgtcgctatcgctttccatttctccatcaagacttaatccttcaattcttgctccaataggatctcctagcattcccacttctattttttccaaaaaca |
40407339 |
T |
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| Q |
101 |
aataaagaaattaatcaaactaattaaatcaaaatacacgttgttttgatttcttt |
156 |
Q |
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| T |
40407340 |
aataaagaaattaatcaaactaattaaatcaaaatacacgttgttttgatttcttt |
40407395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 194 - 333
Target Start/End: Original strand, 40407433 - 40407572
Alignment:
| Q |
194 |
ttagggcatccatgttttttgttatgattataaacctagctatgtgctgaggaaaactcgtaaacaccaacacacctacggatcttagatctaacataag |
293 |
Q |
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| T |
40407433 |
ttagggcatccatgttttttgttatgattataaacctagctatgtgttgaggaaaactcgtaaacgccaacacacctacggatcttagatctaacataag |
40407532 |
T |
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| Q |
294 |
tgtcacgaaacatattttttgttattgaagtatatatcat |
333 |
Q |
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| T |
40407533 |
tgtcaccaaacatattttttgttattgaagtatatatcat |
40407572 |
T |
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