View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13624_high_11 (Length: 236)
Name: NF13624_high_11
Description: NF13624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13624_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 3 - 221
Target Start/End: Original strand, 28917436 - 28917654
Alignment:
| Q |
3 |
aagaacataaaaagaaaacattaaaaagaatgaatttaatcacaacaacctacacaggttataaagtttacaaggttgcctattccggtacagtgttcta |
102 |
Q |
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| T |
28917436 |
aagaacatacaaagaaaacataaaaaagaatgaatttaatcacaacaacctacacaggttataaagtttacaaggttgcctattccggtacagtgttcta |
28917535 |
T |
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| Q |
103 |
caacagtgctgggaaaataaataaatatatcacataaaaagtaaaatctcatagagttgaagaattaacttctcaagtatttttgacataatcaggattc |
202 |
Q |
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| T |
28917536 |
caacagtgctgggaaaataaataaatatatcacataaaaagtaaaatctcatagagttgaagaattaacttctcaagtatttttgacataatcaggattc |
28917635 |
T |
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| Q |
203 |
aggatatgcgggttcaaac |
221 |
Q |
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| T |
28917636 |
aggatatgcaggttcaaac |
28917654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 13 - 211
Target Start/End: Original strand, 28926710 - 28926917
Alignment:
| Q |
13 |
aaagaaaacattaaaaagaatgaatttaatcacaacaacctacacaggttataaagtttacaaggttgcctattccggtacagtgttctacaacagtgct |
112 |
Q |
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| T |
28926710 |
aaagaaaacataataaagaatgaatttaatcgcaacaaccaacacggtttaaaaagtttacgaggttgtcaattctggtgcagttttctacagcaatgct |
28926809 |
T |
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| Q |
113 |
gggaaaataaataaatatatcacataaaaagtaaaatctcatagagttgaaga----------attaacttctcaagtatttttgacataatcaggattc |
202 |
Q |
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| T |
28926810 |
-agcaactaaataaatatatcacataaaaagtataatcccttagagttgaagagaaacataacaccaacttctcaagtattttttatataatcaggattc |
28926908 |
T |
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| Q |
203 |
aggatatgc |
211 |
Q |
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| T |
28926909 |
aggatatgc |
28926917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 220
Target Start/End: Original strand, 28893672 - 28893900
Alignment:
| Q |
13 |
aaagaaaacattaaaaagaatgaatttaatcacaac-aacctacacaggttataaagtt--tacaaggttgcctattccggtacagtgttct---acaac |
106 |
Q |
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||||||||||| ||||||||||||||||||| |||| |||| ||||||||| ||| || ||| |||||||| ||||| || ||||||||| ||||| |
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| T |
28893672 |
aaagaaaacataaaaaagaatgaatttaatcgcaacaaaccaacacaggtttaaaaatttatacgaggttgccaattccagtgcagtgttctataacaac |
28893771 |
T |
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| Q |
107 |
agtgctggga----aaataaataaatatatcacataaaa-agtaaaatctcatagagttgaaga----------attaacttctcaagtatttttgacat |
191 |
Q |
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| T |
28893772 |
aatgctaggaaagtaaataaataaatatatcacataaaatggtgaaatctcttagagttgaagacaaatataacactaacttctcaagccttttttactt |
28893871 |
T |
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| Q |
192 |
aatcaggattcaggatatgcgggttcaaa |
220 |
Q |
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| T |
28893872 |
aatcaggattcaggatatgcaggttcaaa |
28893900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 28903805 - 28903845
Alignment:
| Q |
181 |
atttttgacataatcaggattcaggatatgcgggttcaaac |
221 |
Q |
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| T |
28903805 |
atttttgacctaatcaggattcaggatatgcaggttcaaac |
28903845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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