View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13624_high_4 (Length: 434)
Name: NF13624_high_4
Description: NF13624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13624_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 390; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 24615980 - 24615563
Alignment:
| Q |
1 |
tggaaagctgcagagtatgcaacatgttaccgacgttatgtggaaaaaatcatctttagggagtttaaaatgtaatattgacacgtctttttcttttcac |
100 |
Q |
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|||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
24615980 |
tggacagctgcagagtatgcaacatgttaccgatgttatgtggaaaaagtcatctttagggagtttcaaatgtaatattcacacgtctttttcttttcac |
24615881 |
T |
|
| Q |
101 |
cttaacttagtcagaagaggagtgtgcattagggatgatagtgaggattttgttgaacaaagtgattttgaactggtggattttatgttggattcaaaat |
200 |
Q |
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| T |
24615880 |
ctcaacttagtcagaagaggagtgtgcattagagatgatagtgaggattttgttgaacaaagtgattttgaactggtggattttatgttggattcaaaat |
24615781 |
T |
|
| Q |
201 |
atgtgatagataaatttcacagccaaagagaggatatcattatttctattcacaacttattataactatatataaaaatagttcgactttattctactct |
300 |
Q |
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| T |
24615780 |
atgtgatagataaatttcacagccaaagagaggatatcattatttctattcacaacttattataactatatataaaaatagttcgactttattctactct |
24615681 |
T |
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| Q |
301 |
tctggtgaatggttatgcagcatgtggtagtcactggccttataagtgccaactctatatttcagggttagaaggggctccctagagaaactcctcagaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24615680 |
tctggtgaatggttatgcagcatgtggtagtcactggccttataagtgccaactctatatttcagggttagaaggggctccctagagaaactcctcagaa |
24615581 |
T |
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| Q |
401 |
ttgtttcatgttatatct |
418 |
Q |
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| T |
24615580 |
ttgtttcatgttatatct |
24615563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 24114787 - 24115032
Alignment:
| Q |
1 |
tggaaagctgcagagtatgcaacatgttaccgacgttatgtggaaaaaatcatctttagggagtttaaaatgtaatattgacacgtctttttcttttcac |
100 |
Q |
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|||| ||| ||||||||||||||||||||| || |||||||||||||||||||| ||||||||||| |||||||| ||| || | |||||||||| |||| |
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| T |
24114787 |
tggacagccgcagagtatgcaacatgttactgatgttatgtggaaaaaatcatcgttagggagtttcaaatgtaacattcacgcatctttttcttctcac |
24114886 |
T |
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| Q |
101 |
cttaacttagtcagaagaggagtgtgcattagggatgatagtgaggattttgtt-------gaaca-aagtgattttgaactggtggattttatgttgga |
192 |
Q |
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| T |
24114887 |
ctcaacttcgtcgatataggaatgtgcattagagatgatagtgaggattttgttcttgcaaaaacataagtgattttaagctggtcgatttttagttgga |
24114986 |
T |
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| Q |
193 |
ttcaaaatatgtgatagataaatttcacagccaaagagaggatatc |
238 |
Q |
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| T |
24114987 |
ttcaaaatatgtggtagataaatttctcagtcaaaaggaggatatc |
24115032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 11 - 145
Target Start/End: Original strand, 24108103 - 24108236
Alignment:
| Q |
11 |
cagagtatgcaacatgttaccgacgttatgtggaaaaaatcatctttagggagtttaaaatgtaatattgacacgtctttttcttttcaccttaacttag |
110 |
Q |
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| T |
24108103 |
cagagtatgcaacatgctactgatgttgtgtggaaaa--tcatcgttagggagtttcaaatgtaatattgacgcgtctctttcttctcacctcaacttag |
24108200 |
T |
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| Q |
111 |
tcag-aagaggagtgtgcattagggatgatagtgag |
145 |
Q |
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|| | || ||| |||||||||| |||||||||||| |
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| T |
24108201 |
tcggaaattggaatgtgcattagagatgatagtgag |
24108236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 24115416 - 24115545
Alignment:
| Q |
1 |
tggaaagctgcagagtatgcaacatgttaccgacgttatgtggaaaaaatcatctttagggagtttaaaatgtaatattgacacgtctttttcttttcac |
100 |
Q |
| |
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|||| ||| ||||| ||||||||||| ||| | ||| |||||||||||||||| ||||||||||| |||||||| |||||| |||||||||| |||| |
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| T |
24115416 |
tggacagcggcagaatatgcaacatgctacttatgttgtgtggaaaaaatcatcgttagggagtttcaaatgtaacattgacgtatctttttcttctcac |
24115515 |
T |
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| Q |
101 |
cttaacttagtcagaagaggagtgtgcatt |
130 |
Q |
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|| ||||||||| ||| |||| |||||||| |
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| T |
24115516 |
ctcaacttagtcggaataggaatgtgcatt |
24115545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 327 - 402
Target Start/End: Original strand, 24115638 - 24115713
Alignment:
| Q |
327 |
gtagtcactggccttataagtgccaactctatatttcagggttagaaggggctccctagagaaactcctcagaatt |
402 |
Q |
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|||||||| | |||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
24115638 |
gtagtcacagaccttataagtactaactctatatttcagggttagaaggggctgcctagagaaactcctcataatt |
24115713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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