View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13624_high_6 (Length: 415)

Name: NF13624_high_6
Description: NF13624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13624_high_6
NF13624_high_6
[»] chr3 (3 HSPs)
chr3 (50-196)||(37066507-37066653)
chr3 (75-118)||(51925024-51925067)
chr3 (121-197)||(32982272-32982348)
[»] chr1 (8 HSPs)
chr1 (204-299)||(44653430-44653525)
chr1 (100-198)||(39773357-39773455)
chr1 (85-197)||(18122296-18122408)
chr1 (100-198)||(51308624-51308722)
chr1 (83-148)||(39870965-39871033)
chr1 (138-208)||(47967699-47967769)
chr1 (355-388)||(44653378-44653411)
chr1 (143-195)||(4968924-4968976)
[»] chr8 (3 HSPs)
chr8 (48-112)||(39322506-39322570)
chr8 (100-196)||(32319777-32319873)
chr8 (14-49)||(39322456-39322491)
[»] chr5 (2 HSPs)
chr5 (75-208)||(8469735-8469868)
chr5 (50-94)||(41608954-41608998)
[»] chr2 (4 HSPs)
chr2 (75-196)||(34238822-34238943)
chr2 (75-164)||(41527682-41527771)
chr2 (132-208)||(6583205-6583281)
chr2 (124-208)||(29156145-29156229)
[»] chr4 (1 HSPs)
chr4 (83-199)||(47370941-47371057)
[»] scaffold0119 (2 HSPs)
scaffold0119 (97-199)||(3775-3877)
scaffold0119 (97-199)||(15830-15932)
[»] chr6 (2 HSPs)
chr6 (97-199)||(26666916-26667018)
chr6 (141-199)||(33706815-33706873)


Alignment Details
Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 50 - 196
Target Start/End: Original strand, 37066507 - 37066653
Alignment:
Q  50 taagcgttttgacgttttccaatgaagaaaagaattaaacctcaccctaacaattactattattcaatcttaatcattaattgatattaagattaaaggt 149  Q
    ||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||| | |    
T  37066507 taagcgttttgccgttttccagtgcagaaaagaattaaacctcaccctaacaattactattattcaatcctaaccattaattgatattgagattaaggat 37066606  T
Q  150 caatatttagagtaaatttatttacttattcttggagtcaaaatatc 196  Q
    ||| |||| |||||| ||||   ||||| ||||| ||||||||||||    
T  37066607 caagatttggagtaagtttagagacttactcttgaagtcaaaatatc 37066653  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 75 - 118
Target Start/End: Original strand, 51925024 - 51925067
Alignment:
Q  75 agaaaagaattaaacctcaccctaacaattactattattcaatc 118  Q
    |||||| |||||||||||||||||||||||| ||||||||||||    
T  51925024 agaaaacaattaaacctcaccctaacaattattattattcaatc 51925067  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 121 - 197
Target Start/End: Complemental strand, 32982348 - 32982272
Alignment:
Q  121 aatcattaattgatattaagattaaaggtcaatatttagagtaaatttatttacttattcttggagtcaaaatatcc 197  Q
    ||||||| ||||||||||  ||||| || ||| |||| |||||| | |||  ||||| |||||||||||||||||||    
T  32982348 aatcattgattgatattagaattaatggccaagatttggagtaagtctatagacttactcttggagtcaaaatatcc 32982272  T

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Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 204 - 299
Target Start/End: Original strand, 44653430 - 44653525
Alignment:
Q  204 atataacatacaattaaacataatttatataatcacatggcaagaagtttaattagaaaaactggaagtctatttaaacataatttatatacccga 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||| ||||    
T  44653430 atataacatacaattaaacataatttatataatcacatggcaagaaatttaattaaaaaaactggaagtctatttaaacataatatatatatccga 44653525  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 100 - 198
Target Start/End: Original strand, 39773357 - 39773455
Alignment:
Q  100 caattactattattcaatcttaatcattaattgatattaagattaaaggtcaatatttagagtaaatttatttacttattcttggagtcaaaatatccc 198  Q
    |||||| ||| | ||||||| ||||||||||| ||||||   ||||||||||| |||| |||||| || ||  ||||| ||||||||||||||||||||    
T  39773357 caattattatgaatcaatctaaatcattaattaatattagagttaaaggtcaagatttggagtaagttaatagacttactcttggagtcaaaatatccc 39773455  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 85 - 197
Target Start/End: Original strand, 18122296 - 18122408
Alignment:
Q  85 taaacctcaccctaacaattactattattcaatcttaatcattaattgatattaagattaaaggtcaatatttagagtaaatttatttacttattcttgg 184  Q
    ||||||||||  ||||||||| ||||| |||||||||| |||||||||||||||  |||||||| ||| || | ||||||  | |   ||||| | ||||    
T  18122296 taaacctcactataacaattattattaatcaatcttaaccattaattgatattagaattaaaggccaagatgtggagtaacataacaaacttactattgg 18122395  T
Q  185 agtcaaaatatcc 197  Q
    |||||||||||||    
T  18122396 agtcaaaatatcc 18122408  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 198
Target Start/End: Complemental strand, 51308722 - 51308624
Alignment:
Q  100 caattactattattcaatcttaatcattaattgatattaagattaaaggtcaatatttagagtaaatttatttacttattcttggagtcaaaatatccc 198  Q
    |||||| ||| | ||||||| || |||||||||||||||   ||||| ||||| ||||||||||| || ||  ||||| ||||| ||||||||||||||    
T  51308722 caattattatgaatcaatctaaaccattaattgatattagagttaaaagtcaagatttagagtaagttaatggacttactcttgaagtcaaaatatccc 51308624  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 148
Target Start/End: Complemental strand, 39871033 - 39870965
Alignment:
Q  83 attaaacctcaccctaacaattactattatt---caatcttaatcattaattgatattaagattaaagg 148  Q
    ||||||||||||  ||||||||| |||||||   ||||||||| |||||||||||||||  ||||||||    
T  39871033 attaaacctcactataacaattattattattaatcaatcttaaccattaattgatattagaattaaagg 39870965  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 47967699 - 47967769
Alignment:
Q  138 aagattaaaggtcaatatttagagtaaatttatttacttattcttggagtcaaaatatcccttcccatata 208  Q
    ||||| || ||||||||||  |||||| |||||  ||||| |||||||||||| |||||||| ||||||||    
T  47967699 aagatcaatggtcaatattaggagtaactttatacacttactcttggagtcaatatatccctccccatata 47967769  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 355 - 388
Target Start/End: Complemental strand, 44653411 - 44653378
Alignment:
Q  355 tgtatttaaacataggtcattttcgttcagaatc 388  Q
    |||||||||||||||||||||||| |||||||||    
T  44653411 tgtatttaaacataggtcattttcattcagaatc 44653378  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 195
Target Start/End: Original strand, 4968924 - 4968976
Alignment:
Q  143 taaaggtcaatatttagagtaaatttatttacttattcttggagtcaaaatat 195  Q
    |||||||||| |||| |||||| |||||  ||||| |||||||||||||||||    
T  4968924 taaaggtcaagatttggagtaagtttatagacttactcttggagtcaaaatat 4968976  T

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Target: chr8 (Bit Score: 61; Significance: 5e-26; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 48 - 112
Target Start/End: Original strand, 39322506 - 39322570
Alignment:
Q  48 gataagcgttttgacgttttccaatgaagaaaagaattaaacctcaccctaacaattactattat 112  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  39322506 gataagcgttttgacgttttccagtgaagaaaagaattaaacctcaccctaacaattactattat 39322570  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 100 - 196
Target Start/End: Original strand, 32319777 - 32319873
Alignment:
Q  100 caattactattattcaatcttaatcattaattgatattaagattaaaggtcaatatttagagtaaatttatttacttattcttggagtcaaaatatc 196  Q
    |||||| ||| | ||||||| || |||||||||||||||   ||||||||||| |||| |||||| || ||  ||||| ||||||||||||||||||    
T  32319777 caattattatgaatcaatctaaaccattaattgatattagagttaaaggtcaaaatttggagtaagttaatagacttactcttggagtcaaaatatc 32319873  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 14 - 49
Target Start/End: Original strand, 39322456 - 39322491
Alignment:
Q  14 atcaagaggtttatgttttccggcgttttgtcgaga 49  Q
    ||||||||||| ||||||||||||||||||||||||    
T  39322456 atcaagaggttgatgttttccggcgttttgtcgaga 39322491  T

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Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 75 - 208
Target Start/End: Original strand, 8469735 - 8469868
Alignment:
Q  75 agaaaagaattaaacctcaccctaacaattactattattcaatcttaatcattaattgatattaagattaaaggtcaatatttagagtaaatttatttac 174  Q
    |||||| |||||||||||||||||||||||| |||||||| ||| || |||||||||||| ||   ||||||||  || ||||||||||| | |||  |     
T  8469735 agaaaacaattaaacctcaccctaacaattattattattctatcctagtcattaattgattttggaattaaaggctaagatttagagtaagtctataaat 8469834  T
Q  175 ttattcttggagtcaaaatatcccttcccatata 208  Q
    ||| ||||||||||||||||||||| | ||||||    
T  8469835 ttactcttggagtcaaaatatccctcctcatata 8469868  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 94
Target Start/End: Original strand, 41608954 - 41608998
Alignment:
Q  50 taagcgttttgacgttttccaatgaagaaaagaattaaacctcac 94  Q
    ||||||||||| ||||||||| || ||||||||||||||||||||    
T  41608954 taagcgttttgccgttttccagtgcagaaaagaattaaacctcac 41608998  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 75 - 196
Target Start/End: Complemental strand, 34238943 - 34238822
Alignment:
Q  75 agaaaagaattaaacctcaccctaacaattactattattcaatcttaatcattaattgatattaagattaaaggtcaatatttagagtaaatttatttac 174  Q
    |||||| |||||||||||||||||||||||| |||||||||||| || |||||||||||| ||   ||||||||  || |||| |||||| | |||  ||    
T  34238943 agaaaaaaattaaacctcaccctaacaattattattattcaatcctagtcattaattgattttggaattaaaggctaagatttggagtaagtctatagac 34238844  T
Q  175 ttattcttggagtcaaaatatc 196  Q
    ||| | ||||||||||||||||    
T  34238843 ttacttttggagtcaaaatatc 34238822  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 75 - 164
Target Start/End: Original strand, 41527682 - 41527771
Alignment:
Q  75 agaaaagaattaaacctcaccctaacaattactattattcaatcttaatcattaattgatattaagattaaaggtcaatatttagagtaa 164  Q
    |||||| ||||||| |||||||||||||||| | |||||||||| || |||||||||||| ||   ||||||||| || |||| ||||||    
T  41527682 agaaaacaattaaatctcaccctaacaattattgttattcaatcctagtcattaattgattttggaattaaaggttaagatttggagtaa 41527771  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 208
Target Start/End: Original strand, 6583205 - 6583281
Alignment:
Q  132 gatattaagattaaaggtcaatatttagagtaaatttatttacttattcttggagtcaaaatatcccttcccatata 208  Q
    |||||||  |||||||||||| |||| ||||||  |  | |||||| ||||||||||||||||||||  ||||||||    
T  6583205 gatattagaattaaaggtcaagattttgagtaagatattatacttactcttggagtcaaaatatccccacccatata 6583281  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 208
Target Start/End: Complemental strand, 29156229 - 29156145
Alignment:
Q  124 cattaattgatattaagattaaaggtcaatatttagagtaaatttatttacttattcttggagtcaaaatatcccttcccatata 208  Q
    |||||||| |||||| ||| || |||||  |||| |||||| | | || | ||| ||||||||||||||||||||| ||||||||    
T  29156229 cattaattaatattaggatgaagggtcaggatttggagtaactcttttgagttactcttggagtcaaaatatccctccccatata 29156145  T

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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 83 - 199
Target Start/End: Original strand, 47370941 - 47371057
Alignment:
Q  83 attaaacctcaccctaacaattactattattcaatcttaatcattaattgatattaagattaaaggtcaatatttagagtaaatttatttacttattctt 182  Q
    ||||||||||||  ||||||||| ||||| |||||||||  |||||||||||||||  |||||||||||| || |  ||||| || |   ||||| ||||    
T  47370941 attaaacctcactataacaattattattaatcaatcttagccattaattgatattagaattaaaggtcaagatgtgaagtaacttaacaaacttactctt 47371040  T
Q  183 ggagtcaaaatatccct 199  Q
    |||||||||||||||||    
T  47371041 ggagtcaaaatatccct 47371057  T

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Target: scaffold0119 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 97 - 199
Target Start/End: Original strand, 3775 - 3877
Alignment:
Q  97 taacaattactattattcaatcttaatcattaattgatattaagattaaaggtcaatatttagagtaaatttatttacttattcttggagtcaaaatatc 196  Q
    ||||||||| ||||| |||||||||| |||||||||||||||  |||||||| ||| || | ||||||  | |   ||||| ||||||||||||||||||    
T  3775 taacaattattattaatcaatcttaaccattaattgatattagaattaaaggccaagatgtggagtaacataacaaacttactcttggagtcaaaatatc 3874  T
Q  197 cct 199  Q
    |||    
T  3875 cct 3877  T

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Target: scaffold0119; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 97 - 199
Target Start/End: Original strand, 15830 - 15932
Alignment:
Q  97 taacaattactattattcaatcttaatcattaattgatattaagattaaaggtcaatatttagagtaaatttatttacttattcttggagtcaaaatatc 196  Q
    ||||||||| ||||| |||||||||| |||||||||||||||  |||||||| ||| || | ||||||  | |   ||||| ||||||||||||||||||    
T  15830 taacaattattattaatcaatcttaaccattaattgatattagaattaaaggccaagatgtggagtaacataacaaacttactcttggagtcaaaatatc 15929  T
Q  197 cct 199  Q
    |||    
T  15930 cct 15932  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 97 - 199
Target Start/End: Complemental strand, 26667018 - 26666916
Alignment:
Q  97 taacaattactattattcaatcttaatcattaattgatattaagattaaaggtcaatatttagagtaaatttatttacttattcttggagtcaaaatatc 196  Q
    ||||||||| ||||| |||||||||| |||||||||||||||  |||||||| ||| || | ||||||  | |   ||||| ||||||||||||||||||    
T  26667018 taacaattattattaatcaatcttaaccattaattgatattagaattaaaggccaagatgtggagtaacataacaaacttactcttggagtcaaaatatc 26666919  T
Q  197 cct 199  Q
    |||    
T  26666918 cct 26666916  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 199
Target Start/End: Complemental strand, 33706873 - 33706815
Alignment:
Q  141 attaaaggtcaatatttagagtaaatttatttacttattcttggagtcaaaatatccct 199  Q
    |||||||||||  ||||||||||| || |   |||||||||||||||||||||||||||    
T  33706873 attaaaggtcatgatttagagtaagttaaaacacttattcttggagtcaaaatatccct 33706815  T

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