View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13624_high_9 (Length: 319)
Name: NF13624_high_9
Description: NF13624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13624_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 56 - 300
Target Start/End: Complemental strand, 9094131 - 9093883
Alignment:
| Q |
56 |
ttcaaatttga-tgttactctttttaataatttttaataaaaatattataccttctcttnnnnnnntattagatctattttcgttttatatgattataaa |
154 |
Q |
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| T |
9094131 |
ttcaaatttgaatgttactctttttaataatttttaataaaaatattataccttctcttaaaaaaatattagatctattttcgttttttatgattataaa |
9094032 |
T |
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| Q |
155 |
agttannnnnnnnatcaaaaagaataatatttttagaaatatatttaaatagtacaggattactttaccacaagta---tctttgtacccagacccatat |
251 |
Q |
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| T |
9094031 |
aattattttttttatcaaaaagagtaatatttttagaaatatatttaaatagtacaggattactttaccacaagtatcgtcgtcgtacccagacccatat |
9093932 |
T |
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| Q |
252 |
gccaacggcaaaaagcagtcgggacgaaagcaatgaagttcctcggtgg |
300 |
Q |
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| T |
9093931 |
gccaacgacaaaaagcagtagggatgggagcattgaagttcctcggtgg |
9093883 |
T |
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