View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13624_low_11 (Length: 257)
Name: NF13624_low_11
Description: NF13624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13624_low_11 |
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| [»] scaffold0002 (1 HSPs) |
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| [»] scaffold1779 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 13 - 243
Target Start/End: Complemental strand, 18342988 - 18342758
Alignment:
| Q |
13 |
gaatcataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaatcaaaaaagcagtaccaaattcatctttagaaagatctga |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18342988 |
gaatcataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaatcaaaaaagcagtaccaaattcatctttagaaagatctga |
18342889 |
T |
|
| Q |
113 |
agtgatcagggctgtaattgtacgtacttgtaaagaactaaaacgtagtaatggtataataataaagtatgatgataatgcggcggttctcattgataaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18342888 |
agtgatcagggctgtaattgtacgtacttgtaaagaactaaaacgtagtaatggtataataataaagtatgatgataatgcggcggttctcattgataaa |
18342789 |
T |
|
| Q |
213 |
gaaggaaatccaaaaggaactcgaatttttt |
243 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
18342788 |
gaaggaaatccaaaaggaactcgaatttttt |
18342758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 78 - 243
Target Start/End: Complemental strand, 48288862 - 48288702
Alignment:
| Q |
78 |
aaagcagtaccaaattcatctttagaaagatctgaagtgatcagggctgtaattgtacgtacttgtaaagaactaaaacgtagtaatggtataataataa |
177 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||||| ||| | |||| ||| ||||||||||||||||||| || ||| ||||||||||| |
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| T |
48288862 |
aaaggagtatcaaattcatctttagaaagatctgaagtgattaggagtc-aattatac----ttgtaaagaactaaaacgtggtgatgatataataataa |
48288768 |
T |
|
| Q |
178 |
agtatgatgataatgcggcggttctcattgataaagaaggaaatccaaaaggaactcgaatttttt |
243 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
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| T |
48288767 |
agtatgatgataatgcggcggttctcattgataaagaaggaaattcaaaaggaactcgattttttt |
48288702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 13 - 243
Target Start/End: Complemental strand, 36840761 - 36840531
Alignment:
| Q |
13 |
gaatcataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaatcaaaaaagcagtaccaaattcatctttagaaagatctga |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36840761 |
gaatcataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaatcaaaaaagcagtaccaaattcatctttagaaagatctga |
36840662 |
T |
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| Q |
113 |
agtgatcagggctgtaattgtacgtacttgtaaagaactaaaacgtagtaatggtataataataaagtatgatgataatgcggcggttctcattgataaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36840661 |
agtgatcagggctgtaattgtacgtacttgtaaagaactaaaacgtagtaatggtataataataaagtatgatgataatgcggcggttctcattgataaa |
36840562 |
T |
|
| Q |
213 |
gaaggaaatccaaaaggaactcgaatttttt |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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| T |
36840561 |
gaaggaaatccaaaaggaactcgaatttttt |
36840531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 13 - 243
Target Start/End: Original strand, 164376 - 164606
Alignment:
| Q |
13 |
gaatcataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaatcaaaaaagcagtaccaaattcatctttagaaagatctga |
112 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
164376 |
gaatcataggagctagtaatcaacggtatgcttatattggtgacattgttgttgatgtaatcaaaaaagcagtatcaaattcatctttagaaatatctga |
164475 |
T |
|
| Q |
113 |
agtgatcagggctgtaattgtacgtacttgtaaagaactaaaacgtagtaatggtataataataaagtatgatgataatgcggcggttctcattgataaa |
212 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
164476 |
agtgatcagggttgtaactgtacgtacttgtaaagaactaaaacgtagtaatggtataataataaagtatgatgataatgcggtggttctcattgataat |
164575 |
T |
|
| Q |
213 |
gaaggaaatccaaaaggaactcgaatttttt |
243 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |
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|
| T |
164576 |
gaaggaaatccaaaaggaactagaatttttt |
164606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 13 - 243
Target Start/End: Complemental strand, 14249350 - 14249120
Alignment:
| Q |
13 |
gaatcataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaatcaaaaaagcagtaccaaattcatctttagaaagatctga |
112 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
14249350 |
gaatcataggagctagtaatcaacggtatgcttatattggtgacattgttgttgatgtaatcaaaaaagcagtatcaaattcatctttagaaatatctga |
14249251 |
T |
|
| Q |
113 |
agtgatcagggctgtaattgtacgtacttgtaaagaactaaaacgtagtaatggtataataataaagtatgatgataatgcggcggttctcattgataaa |
212 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
14249250 |
agtgatcagggttgtaactgtacgtacttgtaaagaactaaaacgtagtaatggtataataataaagtatgatgataatgcggtggttctcattgataat |
14249151 |
T |
|
| Q |
213 |
gaaggaaatccaaaaggaactcgaatttttt |
243 |
Q |
| |
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||||||||||||||||||||| ||||||||| |
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| T |
14249150 |
gaaggaaatccaaaaggaactagaatttttt |
14249120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1779 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: scaffold1779
Description:
Target: scaffold1779; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 732 - 958
Alignment:
| Q |
16 |
tcataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaatcaaaaaagcagtaccaaattcatctttagaaagatctgaagt |
115 |
Q |
| |
|
||||||||||||||||||| || |||||| ||||||||||| || |||||||||| ||||| |||||||||||||| || || |||||||||| ||||| |
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|
| T |
732 |
tcataggagctagtaatcgccgatatgctcatattggtgacgttattgttgctgtgatcaaggaagcagtaccaaatacacctctagaaagatcagaagt |
831 |
T |
|
| Q |
116 |
gatcagggctgtaattgtacgtacttgtaaagaactaaaacgtagtaatggtataataataaagtatgatgataatgcggcggttctcattgataaagaa |
215 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||| || || || |||||| |||||||| ||||| || ||| |||||||| ||||| |
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|
| T |
832 |
gatcagagctgtaattgtacgtacttgtaaagaactcaaacgcgacaacgggatgataatacgatatgatgacaatgctgccgttgtcattgatcaagaa |
931 |
T |
|
| Q |
216 |
ggaaatccaaaaggaactcgaattttt |
242 |
Q |
| |
|
||||||||||||||||||||||||||| |
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|
| T |
932 |
ggaaatccaaaaggaactcgaattttt |
958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 13 - 124
Target Start/End: Complemental strand, 46699238 - 46699127
Alignment:
| Q |
13 |
gaatcataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaatcaaaaaagcagtaccaaattcatctttagaaagatctga |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
46699238 |
gaatcataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaataaaaaaagcagtaccaaattcatctttagaaagatctga |
46699139 |
T |
|
| Q |
113 |
agtgatcagggc |
124 |
Q |
| |
|
|||||||||||| |
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|
| T |
46699138 |
agtgatcagggc |
46699127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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