View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13624_low_12 (Length: 237)

Name: NF13624_low_12
Description: NF13624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13624_low_12
NF13624_low_12
[»] chr5 (5 HSPs)
chr5 (151-218)||(13866628-13866695)
chr5 (24-78)||(13856741-13856795)
chr5 (27-74)||(14389751-14389798)
chr5 (31-75)||(13881424-13881468)
chr5 (47-77)||(16022344-16022374)


Alignment Details
Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 151 - 218
Target Start/End: Complemental strand, 13866695 - 13866628
Alignment:
Q  151 gagatggtacaaatgaataacaaattatttcaaaatcaattgaggcttttgttagtgaatatctaaac 218  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  13866695 gagatggtacaaatgaataacaaattattttaaaatcaattgaggcttttgttagtgaatatctaaac 13866628  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 24 - 78
Target Start/End: Complemental strand, 13856795 - 13856741
Alignment:
Q  24 gaatgaatggagttttaaggagggttatatgttctgtaacatggtttatttcata 78  Q
    ||||||||||| |||||||||| ||||||||||  ||||||||||||||||||||    
T  13856795 gaatgaatggaattttaaggagtgttatatgtttggtaacatggtttatttcata 13856741  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 74
Target Start/End: Original strand, 14389751 - 14389798
Alignment:
Q  27 tgaatggagttttaaggagggttatatgttctgtaacatggtttattt 74  Q
    |||||| |||||||||||| |||||||||| |||||||||||||||||    
T  14389751 tgaatgaagttttaaggagtgttatatgttttgtaacatggtttattt 14389798  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 13881468 - 13881424
Alignment:
Q  31 tggagttttaaggagggttatatgttctgtaacatggtttatttc 75  Q
    |||||||||||| || |||||||||| ||||||||||||||||||    
T  13881468 tggagttttaagtagtgttatatgttttgtaacatggtttatttc 13881424  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 77
Target Start/End: Complemental strand, 16022374 - 16022344
Alignment:
Q  47 gttatatgttctgtaacatggtttatttcat 77  Q
    |||||||||||||||||||||||||||||||    
T  16022374 gttatatgttctgtaacatggtttatttcat 16022344  T

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