View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13624_low_3 (Length: 467)
Name: NF13624_low_3
Description: NF13624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13624_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 5 - 454
Target Start/End: Complemental strand, 11360282 - 11359833
Alignment:
| Q |
5 |
aagagcaatgaaaagagacgtcgcattcaaaagacagaaaacactgaaagcaacttcgtgagctatattcgccttccctgcctccggctgttgctttcta |
104 |
Q |
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| T |
11360282 |
aagagaaatgaaaagagacgttgcattcaaaagacagaaaacactgaaagcaacttcgtgagctatattcgccttccctgcctccggttgttgctttcta |
11360183 |
T |
|
| Q |
105 |
tattgacctggcaaactgaacaaagccatgaatgctattgatgcaaaaaggacagcaactactgtgacagaatttatggtgttttggattgcttccctat |
204 |
Q |
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| T |
11360182 |
tattgacctggcaaactgaacaaagccatgaatgctattgatgcaaaaaggacagcaactactgtgacagaatttatggtgttttggattgcttccctat |
11360083 |
T |
|
| Q |
205 |
gaattttcctcaattctttagctataccagaaacccgtttgcgagttttttcattctgtacgagttgtgattgcacctcgtgctttatatcactcacgac |
304 |
Q |
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| T |
11360082 |
gaattttcctcaattctttagctataccagaaacccgtttgcgagttttttcattctgtacgagttgtgattgcacctcgtgctttatatcactcacgac |
11359983 |
T |
|
| Q |
305 |
tcttttaagttccatggcttcattcactttgcctatattccttgcattcttggcaccacattctgaaagggcttccttgatttccagagatgaatctccg |
404 |
Q |
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| T |
11359982 |
tcttttaagttccatggcttcattcactttgcctatattccttgcattcttggcaccacagtctgaaagggcttccttgatttccagagatgaatctccg |
11359883 |
T |
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| Q |
405 |
tacggaagtttatctgccaaatccaaggctgcttcttgctgattattgat |
454 |
Q |
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| T |
11359882 |
tacggaagtttatctgccaaatccaaggctgtttcttgctgattattgat |
11359833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 103 - 455
Target Start/End: Complemental strand, 44399343 - 44398991
Alignment:
| Q |
103 |
tatattgacctggcaaactgaacaaagccatgaatgctattgatgcaaaaaggacagcaactactgtgacagaatttatggtgttttggattgcttccct |
202 |
Q |
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|||||||||| |||||| |||| | ||||| |||||||||||| |||||||| |||||||| ||||||||||| || ||||||||||| | ||||| || |
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| T |
44399343 |
tatattgacccggcaaattgaatatagccaagaatgctattgaggcaaaaagaacagcaaccactgtgacagagttaatggtgttttgaacggcttctct |
44399244 |
T |
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| Q |
203 |
atgaattttcctcaattctttagctataccagaaacccgtttgcgagttttttcattctgtacgagttgtgattgcacctcgtgctttatatcactcacg |
302 |
Q |
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| T |
44399243 |
atggagttttttcaattccttagctataccggaaactcgtcggcgagttttttcgttttgtatgagctgtgactgcacctcatgctttatatcactcact |
44399144 |
T |
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| Q |
303 |
actcttttaagttccatggcttcattcactttgcctatattccttgcattcttggcaccacattctgaaagggcttccttgatttccagagatgaatctc |
402 |
Q |
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|| |||||||||||||||||||| ||||| || | || ||||||| || |||||| |||||||||| ||||| | |||||| | || ||| || |
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| T |
44399143 |
gttcgtttaagttccatggcttcatctactttaccaacatgtcttgcatatttagcaccatattctgaaagtgcttcttggatttctaaagctgacgatc |
44399044 |
T |
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| Q |
403 |
cgtacggaagtttatctgccaaatccaaggctgcttcttgctgattattgatg |
455 |
Q |
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| || || ||||||||||||||||||||||||| |||||| || ||||||||| |
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| T |
44399043 |
catatggcagtttatctgccaaatccaaggctgtttcttgttgcttattgatg |
44398991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 44399441 - 44399401
Alignment:
| Q |
5 |
aagagcaatgaaaagagacgtcgcattcaaaagacagaaaa |
45 |
Q |
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| T |
44399441 |
aagagaaatgaaaagagacgtcgaattcaagagacagaaaa |
44399401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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