View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13624_low_5 (Length: 416)
Name: NF13624_low_5
Description: NF13624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13624_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 7 - 382
Target Start/End: Original strand, 26208366 - 26208741
Alignment:
| Q |
7 |
cttacagaatgtgagagcaaacccatcaaaggagaagtgaaattctgtgccacttctttagaatctatgcttgatttcactcaaagtattcttggtatta |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26208366 |
cttacagaatgtgagagcaaacccatcaaaggagaagtgaaattctgtgccacttctttagaatctatgcttgatttcactcaaagtattcttggtatta |
26208465 |
T |
|
| Q |
107 |
aaaatgatctcaaagtttatgcaacttcacatttaaccaaatcaagtgtcacttttcagaactatactatattagaaaaaattatgaggatttcagctcc |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26208466 |
aaaatgatctcaaagtttatgcaacttcacatttaaccaaatcaagtgtcacttttcagaactatactatattagaaaaaattatgaggatttcagctcc |
26208565 |
T |
|
| Q |
207 |
aaagatggtggcatgtcacactatgccttacccttatgctgttttctattgccatagccaagaaagtgagaataggatatatagagtttcacttgtcggt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
26208566 |
aaagatggtggcatgtcacactatgccttacccttatgctgtattctattgccatagccaagaaagtgaaaataggatatatagagtttcacttgtcggt |
26208665 |
T |
|
| Q |
307 |
gataatggggatatggtggaagctatggttgtttgtcatatggatacttctcattggggacatggtcatgtttcat |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26208666 |
gataatggggatatggtggaagctatggttgtttgtcatatggatacttctcattggggacatggtcatgtttcat |
26208741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 6e-44; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 12 - 382
Target Start/End: Original strand, 49755101 - 49755471
Alignment:
| Q |
12 |
agaatgtgagagcaaacccatcaaaggagaagtgaaattctgtgccacttctttagaatctatgcttgatttcactcaaagtattcttggtattaaaaat |
111 |
Q |
| |
|
|||||||||||| ||||||||||||||||| || || || ||||| || ||||| |||||||||||||| || || |||| |||||||| ||| || |
|
|
| T |
49755101 |
agaatgtgagagtaaacccatcaaaggagaggtaaagttatgtgctacctcttttgaatctatgcttgaatttacacaaaacgttcttggttcaaaatat |
49755200 |
T |
|
| Q |
112 |
gatctcaaagtttatgcaacttcacatttaaccaaatcaagtgtcacttttcagaactatactatattagaaaaaattatgaggatttcagctccaaaga |
211 |
Q |
| |
|
|| || ||| ||||||||||| || |||||| |||||||| ||| | || || ||||||||| |||||| | | | ||| |||||| || | |
|
|
| T |
49755201 |
gaaatccaaggttatgcaactttgcacaaaaccaagtcaagtgttactctccaaaattatactatagtagaaattctaaaggaaattctagctcccaaaa |
49755300 |
T |
|
| Q |
212 |
tggtggcatgtcacactatgccttacccttatgctgttttctattgccatagccaagaaagtgagaataggatatatagagtttcacttgtcggtgataa |
311 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||||||| ||||| ||| ||||||||||||| |||||| | ||||||| |||| | || ||||| || |
|
|
| T |
49755301 |
tggtggcttgtcacactgtgccttacccttatgctgttttttattgtcatggccaagaaagtgataatagggtgtatagagcttcattggttggtgagaa |
49755400 |
T |
|
| Q |
312 |
tggggatatggtggaagctatggttgtttgtcatatggatacttctcattggggacatggtcatgtttcat |
382 |
Q |
| |
|
||| |||| |||||||||||||| ||||||||||||||||| || || |||| || |||||||||||| |
|
|
| T |
49755401 |
tggagataaggtggaagctatggcggtttgtcatatggatacatcacaatgggcaccaagtcatgtttcat |
49755471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 12 - 382
Target Start/End: Complemental strand, 54449173 - 54448803
Alignment:
| Q |
12 |
agaatgtgagagcaaacccatcaaaggagaagtgaaattctgtgccacttctttagaatctatgcttgatttcactcaaagtattcttggtattaaaaat |
111 |
Q |
| |
|
||||||||| |||||||||||||||||||| || || || ||||| || |||||||||||||||||||| || || |||| ||||||||| || |
|
|
| T |
54449173 |
agaatgtgaaagcaaacccatcaaaggagaggttaagttttgtgctacctctttagaatctatgcttgaatttacacaaaacattcttggttcagaatcc |
54449074 |
T |
|
| Q |
112 |
gatctcaaagtttatgcaacttcacatttaaccaaatcaagtgtcacttttcagaactatactatattagaaaaaattatgaggatttcagctccaaaga |
211 |
Q |
| |
|
||| || ||||||||||||||| || ||||||||||||||| |||||||| || || || ||| |||||| || ||| ||| ||||||||||| |
|
|
| T |
54449073 |
gatatccaagtttatgcaactttgcacaaaaccaaatcaagtgttacttttcaaaattacacaatagtagaaattatgatggaaattcgagctccaaaga |
54448974 |
T |
|
| Q |
212 |
tggtggcatgtcacactatgccttacccttatgctgttttctattgccatagccaagaaagtgagaataggatatatagagtttcacttgtcggtgataa |
311 |
Q |
| |
|
||||||| ||||||||| ||||||| |||||||||||||| ||||| ||||| |||||||||||||||||| | |||| ||||| | | | ||||| || |
|
|
| T |
54448973 |
tggtggcttgtcacactgtgccttatccttatgctgttttttattgtcatagtcaagaaagtgagaatagggtgtataaagttttattggggggtgagaa |
54448874 |
T |
|
| Q |
312 |
tggggatatggtggaagctatggttgtttgtcatatggatacttctcattggggacatggtcatgtttcat |
382 |
Q |
| |
|
||| |||| ||| || || ||||| |||||||| | ||||| || || |||| || | |||||||||||| |
|
|
| T |
54448873 |
tggagataaggttgaggccatggtggtttgtcacttagatacatcacaatgggcacctagtcatgtttcat |
54448803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University