View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13624_low_7 (Length: 371)

Name: NF13624_low_7
Description: NF13624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13624_low_7
NF13624_low_7
[»] chr8 (7 HSPs)
chr8 (99-353)||(44551800-44552054)
chr8 (96-280)||(11143845-11144030)
chr8 (96-280)||(1603987-1604171)
chr8 (157-280)||(1661435-1661559)
chr8 (167-280)||(11144206-11144320)
chr8 (2-54)||(44552099-44552151)
chr8 (2-56)||(1603893-1603947)
[»] chr6 (3 HSPs)
chr6 (181-353)||(14986903-14987075)
chr6 (99-273)||(32445856-32446027)
chr6 (2-56)||(32446077-32446131)
[»] chr5 (4 HSPs)
chr5 (99-280)||(9260755-9260937)
chr5 (96-280)||(9260389-9260574)
chr5 (2-53)||(9260293-9260344)
chr5 (2-52)||(9260652-9260702)
[»] chr7 (4 HSPs)
chr7 (96-280)||(13948086-13948271)
chr7 (96-189)||(13947828-13947921)
chr7 (2-56)||(13948311-13948365)
chr7 (143-280)||(1972609-1972748)
[»] chr1 (10 HSPs)
chr1 (96-280)||(29393818-29394003)
chr1 (96-280)||(35163090-35163275)
chr1 (96-280)||(30403024-30403209)
chr1 (96-280)||(30409581-30409766)
chr1 (96-280)||(29394179-29394364)
chr1 (157-280)||(35163451-35163575)
chr1 (167-280)||(30409291-30409405)
chr1 (187-280)||(30402754-30402848)
chr1 (27-56)||(29393749-29393778)
chr1 (2-38)||(30409487-30409523)
[»] chr3 (2 HSPs)
chr3 (99-280)||(55040256-55040438)
chr3 (170-280)||(55039966-55040077)
[»] chr4 (1 HSPs)
chr4 (207-280)||(36892679-36892753)
[»] chr2 (2 HSPs)
chr2 (143-280)||(26450136-26450275)
chr2 (2-56)||(44369379-44369433)


Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 99 - 353
Target Start/End: Complemental strand, 44552054 - 44551800
Alignment:
Q  99 tgcagcccctaaaacaccaacatcacaacggttccgagagacaaaaccaaaaacatgctacctaaaatagcagcagcctcacgcagccaacacagaggca 198  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  44552054 tgcagcccctaaaacaccaacatcacaacggttccgagtgacaaaaccaaaaacctgctacctaaaatagcagcagcctcacgcagccaacacagaggca 44551955  T
Q  199 ctacacagcctgctgcccctcgagagaacaccacaaaaaacagaaacacctcgacaaagtccaccaaaactatcactattttatcataacttgttgtgca 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44551954 ctacacagcctgctgcccctcgagagaacaccacaaaaaacagaaacacctcgacaaagtccaccaaaactatcactattttatcataacttgttgtgca 44551855  T
Q  299 aaatattaacttagtaaatatgaagggatgattcaagttctgccacatataagta 353  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44551854 aaatattaacttagtaaatatgaagggatgattcaagttctgccacatataagta 44551800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 96 - 280
Target Start/End: Complemental strand, 11144030 - 11143845
Alignment:
Q  96 aggtgcagcccctaaaacaccaacatcacaacggttccgagagacaaaaccaaaaacatgctacctaaaatagcagcagcctcacgcagccaacacagag 195  Q
    |||||||||||||||||||||||||||||||||||||| || |||| |||||||||| ||||| ||||||||||||||||||||||||||||||| |||     
T  11144030 aggtgcagcccctaaaacaccaacatcacaacggttcctagtgacagaaccaaaaacctgctatctaaaatagcagcagcctcacgcagccaacaaagat 11143931  T
Q  196 gcactacacagcctgctgcccctcgagagaacaccacaaaaaacagaaa-cacctcgacaaagtccaccaaaactatcactatttt 280  Q
    |||||||||||||||||||||||| |||  ||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||    
T  11143930 gcactacacagcctgctgcccctcaagaacacaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactatttt 11143845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 96 - 280
Target Start/End: Original strand, 1603987 - 1604171
Alignment:
Q  96 aggtgcagcccctaaaacaccaacatcacaacggttccgagagacaaaaccaaaaacatgctacctaaaatagcagcagcctcacgcagccaacacagag 195  Q
    |||||||||||||||||||||||||||| |||| |||| || |||| |||||||||| ||||| ||||| ||||||||||||||||||||||||| ||||    
T  1603987 aggtgcagcccctaaaacaccaacatcataacgattcctagtgacagaaccaaaaacctgctatctaaa-tagcagcagcctcacgcagccaacaaagag 1604085  T
Q  196 gcactacacagcctgctgcccctcgagagaacaccacaaaaaacagaaa-cacctcgacaaagtccaccaaaactatcactatttt 280  Q
    |||||||||| |||||||||||||||||  ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  1604086 gcactacacatcctgctgcccctcgagaacacaccacaaaaaacagaaaccacatcgacaaagtccaccaaaactatcactatttt 1604171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 157 - 280
Target Start/End: Original strand, 1661435 - 1661559
Alignment:
Q  157 tacctaaaatagcagcagcctcacgcagccaacacagaggcactacacagcctgctgcccctcgagagaacaccacaaaaaacagaaa-cacctcgacaa 255  Q
    ||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||| |||||||| ||| ||||||||| |    
T  1661435 tacctgaaatagcagcaccctcacgcagccaacacagaggcaccacacagcctgctgtccctcgagagcacaccataaaaaacataaaccacctcgacga 1661534  T
Q  256 agtccaccaaaactatcactatttt 280  Q
    |||||||||||||||||||||||||    
T  1661535 agtccaccaaaactatcactatttt 1661559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 167 - 280
Target Start/End: Complemental strand, 11144320 - 11144206
Alignment:
Q  167 agcagcagcctcacgcagccaacacagaggcactacacagcctgctgcccctcgagagaacaccacaaaaaacagaaa-cacctcgacaaagtccaccaa 265  Q
    ||||||| ||||||  ||| ||||| ||||||| ||||||||||||| || ||||||| ||||||||||||||| ||| |||||||||||||||||||||    
T  11144320 agcagcaccctcacatagcaaacactgaggcaccacacagcctgctgtccttcgagagcacaccacaaaaaacataaaccacctcgacaaagtccaccaa 11144221  T
Q  266 aactatcactatttt 280  Q
    |||||||||||||||    
T  11144220 aactatcactatttt 11144206  T

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Target: chr8; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 44552151 - 44552099
Alignment:
Q  2 catcaggaccccataaaacacaaatcaaacgcatacgcctgcctcatgattac 54  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  44552151 catcaggaccctataaaacacaaatcaaacgcatacgcctgcctcatgattac 44552099  T

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Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 1603893 - 1603947
Alignment:
Q  2 catcaggaccccataaaacacaaatcaaacgcatacgcctgcctcatgattacgg 56  Q
    ||||||||||  |||||||||||| |||| |||||||||||||||||||||||||    
T  1603893 catcaggaccatataaaacacaaaccaaatgcatacgcctgcctcatgattacgg 1603947  T

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Target: chr6 (Bit Score: 153; Significance: 5e-81; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 181 - 353
Target Start/End: Original strand, 14986903 - 14987075
Alignment:
Q  181 gcagccaacacagaggcactacacagcctgctgcccctcgagagaacaccacaaaaaacagaaacacctcgacaaagtccaccaaaactatcactatttt 280  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14986903 gcagccaacacagaggcactacacagcctactgcccctcgagataacatgacaaaaaacagaaacacctcgacaaagtccaccaaaactatcactatttt 14987002  T
Q  281 atcataacttgttgtgcaaaatattaacttagtaaatatgaagggatgattcaagttctgccacatataagta 353  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14987003 atcataacttgttgtgcaaaatatgaacttagtaaatatgaagggatgattcaagttctgccacatataagta 14987075  T

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Target: chr6; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 99 - 273
Target Start/End: Complemental strand, 32446027 - 32445856
Alignment:
Q  99 tgcagcccctaaaacaccaacatcacaacggttccgagagacaaaaccaaaaacatgctacctaaaatagcagcagcctcacgcagccaacacagaggca 198  Q
    |||| |||||||||||||||||||||||||||    || |||| |||||||||| ||||| ||||||||||||||| |||||||||| |||| |||||||    
T  32446027 tgcaacccctaaaacaccaacatcacaacggt----agtgacagaaccaaaaacctgctatctaaaatagcagcaggctcacgcagctaacaaagaggca 32445932  T
Q  199 ctacacagcctgctgcccctcgagagaacaccacaaaaaacagaaa-cacctcgacaaagtccaccaaaactatca 273  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  32445931 ctacacagcctgctgcccctcgagagcacaccacaaaaaacagaaaccacctcgacaaagtccaccaaaactatca 32445856  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 32446131 - 32446077
Alignment:
Q  2 catcaggaccccataaaacacaaatcaaacgcatacgcctgcctcatgattacgg 56  Q
    |||||| |||| ||||||||||||  ||||||||| |||||||||||||||||||    
T  32446131 catcagaaccctataaaacacaaactaaacgcataagcctgcctcatgattacgg 32446077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 143; Significance: 5e-75; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 99 - 280
Target Start/End: Original strand, 9260755 - 9260937
Alignment:
Q  99 tgcagcccctaaaacaccaacatcacaacggttccgagagacaaaaccaaaaacatgctacctaaaatagcagcagcctcacgcagccaacacagaggca 198  Q
    |||| |||||||||||||||||||||||||||||| || |||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  9260755 tgcaacccctaaaacaccaacatcacaacggttcctagtgacagaaccaaaaacctgctatctaaaatagcagcagcctcacgcagccaacacagaggca 9260854  T
Q  199 ctacacagcctgctgcccctcgagagaacaccacaaaaaacagaaa-cacctcgacaaagtccaccaaaactatcactatttt 280  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  9260855 ctacacagcctgctgcccctcgagagcacaccacaaaaaacagaaaccacctcgacaaaatccaccaaaactatcactatttt 9260937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 96 - 280
Target Start/End: Original strand, 9260389 - 9260574
Alignment:
Q  96 aggtgcagcccctaaaacaccaacatcacaacggttccgagagacaaaaccaaaaacatgctacctaaaatagcagcagcctcacgcagccaacacagag 195  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||| |||||||||||||||||||| ||||| ||||||||||| |||    
T  9260389 aggtgcagcccctaaaacaccaacatcacaatggttccgagtgacataaccaaaaacgtgctacctaaaatagcagcaccctcatgcagccaacaccgag 9260488  T
Q  196 gcactacacagcctgctgcccctcgagagaacaccacaaaaaacagaaa-cacctcgacaaagtccaccaaaactatcactatttt 280  Q
    |||||||||||||||||| |||||||||| |||| |||||||||| ||| |||||||||||||||||||||||||||| |||||||    
T  9260489 gcactacacagcctgctgtccctcgagagcacactacaaaaaacaaaaaccacctcgacaaagtccaccaaaactatcgctatttt 9260574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 9260293 - 9260344
Alignment:
Q  2 catcaggaccccataaaacacaaatcaaacgcatacgcctgcctcatgatta 53  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  9260293 catcaggaccctataaaacacaaaccaaacgcatacgcctgcctcatgatta 9260344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 9260652 - 9260702
Alignment:
Q  2 catcaggaccccataaaacacaaatcaaacgcatacgcctgcctcatgatt 52  Q
    |||||||| || |||||| ||||| ||||| ||||||||||||||||||||    
T  9260652 catcaggatcctataaaatacaaaccaaacacatacgcctgcctcatgatt 9260702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 130; Significance: 3e-67; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 96 - 280
Target Start/End: Complemental strand, 13948271 - 13948086
Alignment:
Q  96 aggtgcagcccctaaaacaccaacatcacaacggttccgagagacaaaaccaaaaacatgctacctaaaatagcagcagcctcacgcagccaacacagag 195  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||| ||||||| ||||||||||| |||||||||||||||||||||    
T  13948271 aggtgcagcccctaaaacacctacatcacaacggttccgagtgacataaccaaaaacacgctacctgaaatagcagcaccctcacgcagccaacacagag 13948172  T
Q  196 gcactacacagcctgctgcccctcgagagaacaccacaaaaaacagaaa-cacctcgacaaagtccaccaaaactatcactatttt 280  Q
    |||| ||||||||||||| |||||||||  ||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||    
T  13948171 gcaccacacagcctgctgtccctcgagaacacaccacaaaaaacataaaccacctcgacaaagtcccccaaaactatcactatttt 13948086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 96 - 189
Target Start/End: Complemental strand, 13947921 - 13947828
Alignment:
Q  96 aggtgcagcccctaaaacaccaacatcacaacggttccgagagacaaaaccaaaaacatgctacctaaaatagcagcagcctcacgcagccaac 189  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||| ||||||||||| ||||||||||| ||||||    
T  13947921 aggtgcagcccctaaaacaccaacatcacaacggttcctagtgacaaaaccaaaaacctgctatctaaaatagcaacagcctcacgctgccaac 13947828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 13948365 - 13948311
Alignment:
Q  2 catcaggaccccataaaacacaaatcaaacgcatacgcctgcctcatgattacgg 56  Q
    ||||||||||  |||||||||||| ||||||||||||||||||||||||||||||    
T  13948365 catcaggaccatataaaacacaaaccaaacgcatacgcctgcctcatgattacgg 13948311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 280
Target Start/End: Complemental strand, 1972748 - 1972609
Alignment:
Q  143 aaccaaaaacatgctacctaaaatagcagcagcctcacgcagccaacacagaggcactacac--agcctgctgcccctcgagagaacaccacaaaaaaca 240  Q
    ||||| |||| |||||||||||| | ||||| |||||||||||||||   ||||||| | |   | |||||||||||||||| | ||||| ||||  |||    
T  1972748 aaccataaacctgctacctaaaa-accagcaacctcacgcagccaaccttgaggcaccaaaacaaacctgctgcccctcgagggcacaccgcaaaggaca 1972650  T
Q  241 gaaac-acctcgacaaagtccaccaaaactatcactatttt 280  Q
    ||||| || |||| ||||||||||||||||| |||||||||    
T  1972649 gaaaccacttcgaaaaagtccaccaaaactaccactatttt 1972609  T

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Target: chr1 (Bit Score: 130; Significance: 3e-67; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 96 - 280
Target Start/End: Original strand, 29393818 - 29394003
Alignment:
Q  96 aggtgcagcccctaaaacaccaacatcacaacggttccgagagacaaaaccaaaaacatgctacctaaaatagcagcagcctcacgcagccaacacagag 195  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||| ||||||| ||||||||||| |||||||||||||||||||||    
T  29393818 aggtgcagcccctaaaacacctacatcacaacggttccgagtgacataaccaaaaacacgctacctgaaatagcagcaccctcacgcagccaacacagag 29393917  T
Q  196 gcactacacagcctgctgcccctcgagagaacaccacaaaaaacagaaa-cacctcgacaaagtccaccaaaactatcactatttt 280  Q
    |||||||||| |||||||  ||||||||| ||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  29393918 gcactacacatcctgctgttcctcgagagcacatcacaaaaaacataaaccacctcgacaaagtccaccaaaactatcactatttt 29394003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 96 - 280
Target Start/End: Complemental strand, 35163275 - 35163090
Alignment:
Q  96 aggtgcagcccctaaaacaccaacatcacaacggttccgagagacaaaaccaaaaacatgctacctaaaatagcagcagcctcacgcagccaacacagag 195  Q
    |||||||||||||||||||||||||||||||||||||| || |||| |||||||||| ||||| ||||||||||||||||||||||||||||||| |||     
T  35163275 aggtgcagcccctaaaacaccaacatcacaacggttcctagtgacagaaccaaaaacctgctatctaaaatagcagcagcctcacgcagccaacaaagat 35163176  T
Q  196 gcactacacagcctgctgcccctcgagagaacaccacaaaaaacagaaa-cacctcgacaaagtccaccaaaactatcactatttt 280  Q
    |||||||||||||||||||||||| |||  ||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||    
T  35163175 gcactacacagcctgctgcccctcaagaacacaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactatttt 35163090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 96 - 280
Target Start/End: Original strand, 30403024 - 30403209
Alignment:
Q  96 aggtgcagcccctaaaacaccaacatcacaacggttccgagagacaaaaccaaaaacatgctacctaaaatagcagcagcctcacgcagccaacacagag 195  Q
    |||||||||||||||||||||||||||||||||||||| ||  |||||||||||||  ||||| ||||||||||||||||||||||||||||||| |||     
T  30403024 aggtgcagcccctaaaacaccaacatcacaacggttcctagtaacaaaaccaaaaatctgctatctaaaatagcagcagcctcacgcagccaacaaagat 30403123  T
Q  196 gcactacacagcctgctgcccctcgagagaacaccacaaaaaacagaaa-cacctcgacaaagtccaccaaaactatcactatttt 280  Q
    |||||||||||||||||||||||| |||  ||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||    
T  30403124 gcactacacagcctgctgcccctcaagaacacaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactatttt 30403209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 96 - 280
Target Start/End: Original strand, 30409581 - 30409766
Alignment:
Q  96 aggtgcagcccctaaaacaccaacatcacaacggttccgagagacaaaaccaaaaacatgctacctaaaatagcagcagcctcacgcagccaacacagag 195  Q
    |||||||||||||||||||||||||||||||||||||| ||  |||||||||||||  ||||| ||||||||||||||||||||||||||||||| |||     
T  30409581 aggtgcagcccctaaaacaccaacatcacaacggttcctagtaacaaaaccaaaaatctgctatctaaaatagcagcagcctcacgcagccaacaaagat 30409680  T
Q  196 gcactacacagcctgctgcccctcgagagaacaccacaaaaaacagaaa-cacctcgacaaagtccaccaaaactatcactatttt 280  Q
    |||||||||||||||||||||||| |||  ||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||    
T  30409681 gcactacacagcctgctgcccctcaagaacacaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactatttt 30409766  T

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Target: chr1; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 96 - 280
Target Start/End: Original strand, 29394179 - 29394364
Alignment:
Q  96 aggtgcagcccctaaaacaccaacatcacaacggttccgagagacaaaaccaaaaacatgctacctaaaatagcagcagcctcacgcagccaacacagag 195  Q
    |||||||||||||||||||||||||||||||||||||| || |||| |||||||||| || || |||||||||||||||||||||||||| |||| |||     
T  29394179 aggtgcagcccctaaaacaccaacatcacaacggttcctagtgacagaaccaaaaacctgttatctaaaatagcagcagcctcacgcagctaacaaagat 29394278  T
Q  196 gcactacacagcctgctgcccctcgagagaacaccacaaaaaacagaaa-cacctcgacaaagtccaccaaaactatcactatttt 280  Q
    ||||||||||| |||||||||||| |||  ||||||| ||||||||||| ||||||||||||||  ||||||||||||||||||||    
T  29394279 gcactacacagtctgctgcccctcaagaacacaccacgaaaaacagaaaccacctcgacaaagtataccaaaactatcactatttt 29394364  T

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Target: chr1; HSP #6
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 157 - 280
Target Start/End: Complemental strand, 35163575 - 35163451
Alignment:
Q  157 tacctaaaatagcagcagcctcacgcagccaacacagaggcactacacagcctgctgcccctcgagagaacaccacaaaaaacagaaa-cacctcgacaa 255  Q
    ||||| ||||||||||| |||||| |||||||||||||||||| |||||||||| || |||||||||| ||||||||||||||| ||| ||| |||||||    
T  35163575 tacctgaaatagcagcaccctcacccagccaacacagaggcaccacacagcctgttgtccctcgagagcacaccacaaaaaacataaaccacttcgacaa 35163476  T
Q  256 agtccaccaaaactatcactatttt 280  Q
    |||||||||||||||||||||||||    
T  35163475 agtccaccaaaactatcactatttt 35163451  T

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Target: chr1; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 167 - 280
Target Start/End: Original strand, 30409291 - 30409405
Alignment:
Q  167 agcagcagcctcacgcagccaacacagaggcactacacagcctgctgcccctcgagagaacaccacaaaaaacagaaa-cacctcgacaaagtccaccaa 265  Q
    ||||||| ||||||||||| ||||| ||||||| ||||||||||||| || ||||||| ||||||||||||||| ||| |||||||||| ||||||||||    
T  30409291 agcagcaccctcacgcagcaaacactgaggcaccacacagcctgctgtccttcgagagcacaccacaaaaaacataaaccacctcgacagagtccaccaa 30409390  T
Q  266 aactatcactatttt 280  Q
    |||||||||||||||    
T  30409391 aactatcactatttt 30409405  T

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Target: chr1; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 187 - 280
Target Start/End: Original strand, 30402754 - 30402848
Alignment:
Q  187 aacacagaggcactacacagcctgctgcccctcgagagaacaccacaaaaaacagaaa-cacctcgacaaagtccaccaaaactatcactatttt 280  Q
    ||||| ||||||| ||||||||||||| || ||||||| ||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||    
T  30402754 aacactgaggcaccacacagcctgctgtccttcgagagcacaccacaaaaaacataaaccacctcgacagagtccaccaaaactatcactatttt 30402848  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 56
Target Start/End: Original strand, 29393749 - 29393778
Alignment:
Q  27 caaacgcatacgcctgcctcatgattacgg 56  Q
    ||||||||||||||||||||||||||||||    
T  29393749 caaacgcatacgcctgcctcatgattacgg 29393778  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 30409487 - 30409523
Alignment:
Q  2 catcaggaccccataaaacacaaatcaaacgcatacg 38  Q
    |||||||| || |||||||||||||||||||||||||    
T  30409487 catcaggatcctataaaacacaaatcaaacgcatacg 30409523  T

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Target: chr3 (Bit Score: 123; Significance: 4e-63; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 99 - 280
Target Start/End: Original strand, 55040256 - 55040438
Alignment:
Q  99 tgcagcccctaaaacaccaacatcacaacggttccgagagacaaaaccaaaaacatgctacctaaaatagcagcagcctcacgcagccaacacagaggca 198  Q
    ||||||||||||||||||||||||||||||||||| || |||| |||||||||| ||||| ||||||||||||||||||||||||||||||| ||| |||    
T  55040256 tgcagcccctaaaacaccaacatcacaacggttcctagtgacagaaccaaaaacctgctatctaaaatagcagcagcctcacgcagccaacaaagatgca 55040355  T
Q  199 ctacacagcctgctgcccctcgagagaacaccacaaaaaacagaaa-cacctcgacaaagtccaccaaaactatcactatttt 280  Q
    ||||||||||||||||||||| |||  ||||||||||||||||||| ||||||||||||||  ||||||| ||||||||||||    
T  55040356 ctacacagcctgctgcccctcaagaacacaccacaaaaaacagaaaccacctcgacaaagtataccaaaaatatcactatttt 55040438  T

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Target: chr3; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 170 - 280
Target Start/End: Original strand, 55039966 - 55040077
Alignment:
Q  170 agcagcctcacgcagccaacacagaggcactacacagcctgctgcccctcgagagaacaccacaaaaaacagaaa-cacctcgacaaagtccaccaaaac 268  Q
    |||| ||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||    
T  55039966 agcaccctcacgcagccaacacagaggcaccacacagcctgctgtccctcgagagcacaccacaaaaaacataaaccacctcgacaaagtccaccaaaac 55040065  T
Q  269 tatcactatttt 280  Q
    ||||||||||||    
T  55040066 tatcactatttt 55040077  T

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Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 207 - 280
Target Start/End: Complemental strand, 36892753 - 36892679
Alignment:
Q  207 cctgctgcccctcgagagaacaccacaaaaaacagaaac-acctcgacaaagtccaccaaaactatcactatttt 280  Q
    |||||||||||||||| | ||||| ||||| |||||||| || ||||||||||||||||||||||||||||||||    
T  36892753 cctgctgcccctcgagggcacaccgcaaaagacagaaaccacttcgacaaagtccaccaaaactatcactatttt 36892679  T

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Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 143 - 280
Target Start/End: Complemental strand, 26450275 - 26450136
Alignment:
Q  143 aaccaaaaacatgctacctaaaatagcagcagcctcacgcagccaacacagaggcactacac--agcctgctgcccctcgagagaacaccacaaaaaaca 240  Q
    ||||| |||| || ||||||||| | |||||||||||||||||||||   ||||||| | |   | |||||||||||||||| | ||||| ||||| |||    
T  26450275 aaccataaacctgatacctaaaa-accagcagcctcacgcagccaaccttgaggcaccaaaacaaacctgctgcccctcgagggcacaccgcaaaagaca 26450177  T
Q  241 gaaac-acctcgacaaagtccaccaaaactatcactatttt 280  Q
    ||||| || |||||||||||||||||||||| |||||||||    
T  26450176 gaaaccacttcgacaaagtccaccaaaactaccactatttt 26450136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 44369379 - 44369433
Alignment:
Q  2 catcaggaccccataaaacacaaatcaaacgcatacgcctgcctcatgattacgg 56  Q
    ||||||||||  |||||||||||| |||| |||||||||||||||||||||||||    
T  44369379 catcaggaccatataaaacacaaaccaaatgcatacgcctgcctcatgattacgg 44369433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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