View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13624_low_8 (Length: 321)

Name: NF13624_low_8
Description: NF13624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13624_low_8
NF13624_low_8
[»] chr5 (1 HSPs)
chr5 (14-307)||(12273246-12273539)


Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 14 - 307
Target Start/End: Complemental strand, 12273539 - 12273246
Alignment:
Q  14 taagattcaaaggccattgaaaaaccctagcatgctcatcaaaattaagaacttccctatcattctcgctacgaatccaaagcggttcattcatttgaca 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  12273539 taagattcaaaggccattgaaaaaccctagcatgctcatcaaaattaagaacttctctatcattctcgctacgaatccaaagtggttcattcatttgaca 12273440  T
Q  114 catcttaacaagctcagccatagaagaagctgcaagttccatagcaagtgatttttcatcttccattaataagagacctccctcttgaaattgtgaaggt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12273439 catcttaacaagctcagccatagaagaagctgcaagttccatagcaagtgatttttcatcttccattaataagagacctccctcttgaaattgtgaaggt 12273340  T
Q  214 tcaggtggtaacatagggacaggaatcatttcagtgcatggtggcattggatcaaagtgccttggataaatgttcatgtctaagtccagtgatg 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12273339 tcaggtggtaacatagggacaggaatcatttcagtgcatggtggcattggatcaaagtgccttggataaatgttcatgtctaagtccagtgatg 12273246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University