View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13625_low_1 (Length: 431)
Name: NF13625_low_1
Description: NF13625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13625_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 310
Target Start/End: Complemental strand, 34561703 - 34561410
Alignment:
| Q |
18 |
gtaaatcgaaattgttaagccaaaataagtgttgatgggaaatcatagtttctaaaatattgtgtcctctttgtcgaaatatatcgtaccatcatctttt |
117 |
Q |
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| T |
34561703 |
gtaaatcgaaattgttaagccaaaataagtgttgatgggaaatcatagtttctaaaatattgtgtcctctttgtcgaaatatattgtgccatcatctttt |
34561604 |
T |
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| Q |
118 |
aagtttaatgttggaagtgcatgaaagaaaaactgtgtttttcatgcattgattgtattgactttttcttctaatccttgtattgattggttgctagtgc |
217 |
Q |
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| T |
34561603 |
aagtttaatgttggaagtgcatgaaagaaaaactgtg-ttttcatgcattgattgtattgactttttcttctaatccttgtattgattggttgctagtgc |
34561505 |
T |
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| Q |
218 |
tggcaccatatgtttcttgatcatttcttcagtgcacc--atatataattgaaccaaaagccaagaaaattggatttcatgatgcttaatttcta |
310 |
Q |
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| T |
34561504 |
tagcaccatatgtttcttgatcatttctttagtgcaccatatatataattgaaccaaaagccaagaaaattggatttcatgatgcttaatttcta |
34561410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 339 - 418
Target Start/End: Complemental strand, 34561380 - 34561302
Alignment:
| Q |
339 |
agggcagttggggataagtggtactgtatgtatgcagtatggtgtttgagggggtgagataggtattttattgataatgg |
418 |
Q |
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| T |
34561380 |
agggcagttggggataa-tggtactgtatgtatgcagtatggtgtttgagggggtgagataggtattttattgataatgg |
34561302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 253 - 310
Target Start/End: Original strand, 34583608 - 34583665
Alignment:
| Q |
253 |
accatatataattgaaccaaaagccaagaaaattggatttcatgatgcttaatttcta |
310 |
Q |
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| T |
34583608 |
accatagataatggaaccaaaagcctagaaagttggatttcatggtgcttgatttcta |
34583665 |
T |
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