View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13625_low_3 (Length: 397)
Name: NF13625_low_3
Description: NF13625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13625_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 11 - 382
Target Start/End: Complemental strand, 41222269 - 41221888
Alignment:
| Q |
11 |
cacagaggaactttaacaagaccattaaggtaatcaagatcattagagaatttatactatactata----------attaacaaagtttgattagaaaga |
100 |
Q |
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| T |
41222269 |
cacagaggaacttcaacaagaccattaaggtaatcaagatcattagagaatttatactatactatactatactataattaacaaagtttgattagaaaga |
41222170 |
T |
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| Q |
101 |
gaagagtctgaatgtgttgtttttatagtatgcatgtcgaaagacactagcagacaatcgaccacgcgtacgtggcaggtttgcacgtaatgacgagccc |
200 |
Q |
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| T |
41222169 |
gaagagtctgaatgtgttgtttttatagtatgcatgtcgaaagacactagcagacaatcgaccacgcgtacgtggcaggtttgcacgcaatgacgagccc |
41222070 |
T |
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| Q |
201 |
acagagattcctaaggctccatgtttaatcagagatgaagacgaagtcgatttctgggtaaatattactgattcattttgttgctttcttcattttcaac |
300 |
Q |
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| T |
41222069 |
acagagattcctaaggctccatgtttaatcagagatgaagacgaagtcgatttctgggtaaatattactaattcattttgttgctttcttcattttcaac |
41221970 |
T |
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| Q |
301 |
atcaatgtgagagcaaacgtctttgaaattgtaagcatgtaaggattgcacattcggttaaatgtgtcacaccatagtttgt |
382 |
Q |
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| T |
41221969 |
atcaatgtgagagcaaacgtctttgaaattgtaagcatgtaaggattgcacattcggttaaatgtgtcacaccatagtttgt |
41221888 |
T |
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Back To:
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Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 127 - 190
Target Start/End: Original strand, 2637053 - 2637116
Alignment:
| Q |
127 |
agtatgcatgtcgaaagacactagcagacaatcgaccacgcgtacgtggcaggtttgcacgtaa |
190 |
Q |
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| T |
2637053 |
agtatgcatgccgaaagacactagcagacaatcgaacacgcatacgtggcagattcgcacgtaa |
2637116 |
T |
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