View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13626_low_1 (Length: 826)
Name: NF13626_low_1
Description: NF13626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13626_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 667; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 667; E-Value: 0
Query Start/End: Original strand, 23 - 721
Target Start/End: Original strand, 33966498 - 33967196
Alignment:
| Q |
23 |
tatgtcttccatcgaagcttatctactactcaagtccaatcaattgattaccttaacatacatattttatcacaatttttcgcaatatcaagaattccga |
122 |
Q |
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| T |
33966498 |
tatgtcttccatccaagcttatctactactcgagtccaatcaattgattaccttaacatacatattttatcacaatttttcgcaatatcaagaattccga |
33966597 |
T |
|
| Q |
123 |
cgtgaccgcaaattaaaaactttggacacaatcacaccacaaacaaaggaaaatgagataaagtatagtactactcacgtgtaaactcctgcatgaacct |
222 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33966598 |
cgtgaccgcaaattaaaaactttggacacaatgacaccacaaacaaaggaaaatgagataaagtatagtactactcacgtgtaaactcctgcatgaacct |
33966697 |
T |
|
| Q |
223 |
tgatgacaactctaacaagattgatggaaggaagagaatcaatggcatcttgaattgtatcaaaatctccaaaagaaggattcttatcaacgtgcaaagt |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33966698 |
tgatgacaactctaacaagattgatggaaggaagagaatcaatggcattttgaattgtatcaaaatctccaaaagaaggattcttatcaacgtgcaaagt |
33966797 |
T |
|
| Q |
323 |
ataagaagcaaatagcttattttttgcagccttgtaaacagtgtgtttgagaccaccaacaaaactcacccatttcgtgaattgttgttctgctaagtct |
422 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
33966798 |
ataagaagcaaatagcttattttttgcagccttgtaaacagtgtgtttgagaccaccaacaaaactcacccatttcatgaattgttgttctgctaagtct |
33966897 |
T |
|
| Q |
423 |
gctcttgttgtattgtaggttgataaaccgtttcgagcggaacgtatcggtcgaattccttttgtatgacaatgtattgtggtcagattttgtacaagaa |
522 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33966898 |
gctcttgttgtattgtaggttgataaaccgtttcgagcagaacgtatcggtcgaattccttttgtatgacaatgtattgtggtcagattttgtacaagaa |
33966997 |
T |
|
| Q |
523 |
gaagaagaaataacaacatgctgaaaatgtaatgcatgtttgacattcttaagagaagattgtgaaaatgaaaaaatgatggagaatggtatgttttagt |
622 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
33966998 |
gaagaagaaataacaacatgctgaaaatgtaatgcatgtttgacattcttaagagaagattgtgaaaatgaaaaaatgatggagaatggtatgttttggt |
33967097 |
T |
|
| Q |
623 |
ttggtttatatatactagttatgtttccaaaatgcgcgtaatcgtaggttttggtttcgaattcagtcatagaactgcaataagattaaaactctaaac |
721 |
Q |
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| T |
33967098 |
ttggtttatatatactagttatgtttccaaaatgcgcgtaatcataggttttggtttcgaattcagtcatagaactgcaataagattaaaactctaaac |
33967196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 704 - 808
Target Start/End: Original strand, 33967212 - 33967316
Alignment:
| Q |
704 |
aagattaaaactctaaacaaaatatttggtcatatattatggtcctatccgactcgagagattagtctgtgtgattgtgcgctgaggatatgtaggttac |
803 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33967212 |
aagattaaaactctaaacaaaatatttggtcatatattatggtcttatctaactcgagagattagtctgtgtgattgtgcgctgaggatatgtaggttac |
33967311 |
T |
|
| Q |
804 |
attat |
808 |
Q |
| |
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||||| |
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| T |
33967312 |
attat |
33967316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 194 - 414
Target Start/End: Complemental strand, 43076909 - 43076689
Alignment:
| Q |
194 |
tactcacgtgtaaactcctgcatgaaccttgatgacaactctaacaagattgatggaaggaagagaatcaatggcatcttgaattgtatcaaaatc-tcc |
292 |
Q |
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|||| |||||||||| |||||||||||||| ||||||||||| || | ||| ||| | ||||| ||||||||||| ||||||||| || |||||| ||| |
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| T |
43076909 |
tacttacgtgtaaacccctgcatgaaccttaatgacaactctcactaaattaatgaagggaagggaatcaatggctgcttgaattg-atgaaaatcctcc |
43076811 |
T |
|
| Q |
293 |
aaaagaaggattcttatcaacgtgcaaagtataagaagcaaatagcttattttttgcagccttgtaaacagtgtgtttgagaccaccaacaaaactcacc |
392 |
Q |
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| | || |||| ||||| |||||||||||||| ||| ||||||||||| || | | | ||||| |||||||||||||||||||| ||||| |
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| T |
43076810 |
tttacttgaatgtttataaacgttcaaagtataagaaggaaaaagcttatttttggctgttctaaagacagtatgtttgagaccaccaacaaatttcacc |
43076711 |
T |
|
| Q |
393 |
catttcgtgaattgttgttctg |
414 |
Q |
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|||||| ||||||||||||||| |
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| T |
43076710 |
catttcatgaattgttgttctg |
43076689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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