View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13626_low_2 (Length: 616)
Name: NF13626_low_2
Description: NF13626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13626_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 454; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 19 - 614
Target Start/End: Original strand, 1521912 - 1522507
Alignment:
| Q |
19 |
taaaccaccatataaaatcaaacgtttatcttagatatggtacacaaaatggatatgcatatgtaaatatcattaacnnnnnnnnnnnnnnnctatat-- |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
1521912 |
taaaccaccatataaaatcaaacgtttatcttagatatggtacacaaaatggatatgcatatgtaaatatcattgacaaaaaaaaaaactatatatatgt |
1522011 |
T |
|
| Q |
117 |
-atatgtgatgagtgatgactaaaccattgttatatatattacctccaaaa-aatccattattatattaggtcattatcccaagactctaaacaccactc |
214 |
Q |
| |
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|| ||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1522012 |
gatgagtgatgagtgatgactaaaccattgttatat----tacctctaaaaaaatccattattatattaggtcattatcccaagactctaaacaccactc |
1522107 |
T |
|
| Q |
215 |
gtgagtgttccaatagacatttacagtagaattaacccctaacctcctaaatcttttccaatcacgaagggttttctttaaatcagccaccttggcagtg |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1522108 |
gtgagtgttccaatagacatttacagtagaattaacccctaacctcctaaatcttttccaatcacgaagggttttctttaaatcagccaccttggcagtg |
1522207 |
T |
|
| Q |
315 |
atgctcctacaacaattggcatggacagtggttacagccctaaaatctttactatcttggcaaaatccactaaaatagagggtatccaagaaccttgcct |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1522208 |
atgctcctacaacaattggcatggacagtggttacagccctaaaatctttactatcttggcaaaatccactaaaatagagggtatccaagaaccttgcct |
1522307 |
T |
|
| Q |
415 |
tgattcccaaatctcgaaatataccacctttaatgaggtcctcaagcacatcttgctccnnnnnnnctgtgaaattatctttcattccataccatgtctc |
514 |
Q |
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| T |
1522308 |
tgattcccaaatctcgaaatataccacctttaatgaggtcctcaagcacatcttgctcctttttttctgtgaaattatctttcattccataccatgtctc |
1522407 |
T |
|
| Q |
515 |
aaacaaagatatggtcttgttgtttgatctcacaaagaaaaatccagtattgactcgannnnnnnctgaccaaggatcaccaaagtattcgtctgtgctg |
614 |
Q |
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| T |
1522408 |
aaacaaagatatggtcttgttgtttgatctcacaaagaaaaatccagtattgactcgatttttttctgaccaaggatcaccaaagtattcgtctgtgctg |
1522507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 205 - 613
Target Start/End: Original strand, 1512532 - 1512940
Alignment:
| Q |
205 |
aacaccactcgtgagtgttccaatagacatttacagtagaattaacccctaacctcctaaatcttttccaatcacgaagggttttctttaaatcagccac |
304 |
Q |
| |
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|||||||||| ||| | |||||| || ||| ||| |||| ||| || |||||||||||||| |||||||||||||||||| ||| ||||| ||||| |
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| T |
1512532 |
aacaccactcatgacttgtccaattgatattcacattagagttagcctctaacctcctaaattgcttccaatcacgaagggttgccttcaaatcggccac |
1512631 |
T |
|
| Q |
305 |
cttggcagtgatgctcctacaacaattggcatggacagtggttacagccctaaaatctttactatcttggcaaaatccactaaaatagagggtatccaag |
404 |
Q |
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| T |
1512632 |
cttcgcagtgatgcttcgacaacagttggcatgaatgatcgttactgccctaacatctttactgtcttggcaaaatccactaaaataaagggtatccaag |
1512731 |
T |
|
| Q |
405 |
aaccttgccttgattcccaaatctcgaaatataccacctttaatgaggtcctcaagcacatcttgctccnnnnnnnctgtgaaattatctttcattccat |
504 |
Q |
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|| || |||||| || |||| || |||||||||| ||| ||||||||| |||||||||||||||| ||||| |||| |||||| |||||| |
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| T |
1512732 |
aatctaaccttgagccctaaatgtccaaatataccagcttcaatgaggtcaataagcacatcttgctcctttttacctgtggaattgtctttctttccat |
1512831 |
T |
|
| Q |
505 |
accatgtctcaaacaaagatatggtcttgttgtttgatctcacaaagaaaaatccagtattgactcgannnnnnnctgaccaaggatcaccaaagtattc |
604 |
Q |
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||||||| |||||||| ||||||||||| || ||||| ||||||||||||||||||||||||| | |||||||||||||||||| |||| | |
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| T |
1512832 |
accatgtttcaaacaaggatatggtctttttatttgacctcacaaagaaaaatccagtattgatcaaatgtttttctgaccaaggatcaccaaggtatac |
1512931 |
T |
|
| Q |
605 |
gtctgtgct |
613 |
Q |
| |
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||||||||| |
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| T |
1512932 |
gtctgtgct |
1512940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 253 - 565
Target Start/End: Original strand, 1517783 - 1518095
Alignment:
| Q |
253 |
ctaacctcctaaatcttttccaatcacgaagggttttctttaaatcagccaccttggcagtgatgctcctacaacaattggcatggacagtggttacagc |
352 |
Q |
| |
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|||||||||||||| ||||||||| ||||| | |||||||||||||||||| |||| ||||| | ||||||||||||||| |||||||| || | |
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| T |
1517783 |
ctaacctcctaaattgcttccaatcatgaaggactgcctttaaatcagccacctttgcagctatgcttcgacaacaattggcatgaacagtggtcacttc |
1517882 |
T |
|
| Q |
353 |
cctaaaatctttactatcttggcaaaatccactaaaatagagggtatccaagaaccttgccttgattcccaaatctcgaaatataccacctttaatgagg |
452 |
Q |
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|||||| |||||||||||||| |||||||||||||||||||| |||||||||||||| | || | |||||||| || || |||||||||| ||||||| |
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| T |
1517883 |
cctaaagtctttactatcttgacaaaatccactaaaatagagagtatccaagaacctaacatttagtcccaaatgtccaattataccacctccaatgagg |
1517982 |
T |
|
| Q |
453 |
tcctcaagcacatcttgctccnnnnnnnctgtgaaattatctttcattccataccatgtctcaaacaaagatatggtcttgttgtttgatctcacaaaga |
552 |
Q |
| |
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|| |||||||||||||||| ||||| |||||||||||||||||| |||| | ||||||||||||||||||||||| || || ||| ||||| |
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| T |
1517983 |
tcaagaagcacatcttgctccttttttcctgtggaattatctttcattccattccatatttcaaacaaagatatggtcttgttattcgacctcgcaaagt |
1518082 |
T |
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| Q |
553 |
aaaatccagtatt |
565 |
Q |
| |
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||||||||||||| |
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| T |
1518083 |
aaaatccagtatt |
1518095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 133; Significance: 7e-69; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 246 - 567
Target Start/End: Original strand, 16643447 - 16643768
Alignment:
| Q |
246 |
ttaacccctaacctcctaaatcttttccaatcacgaagggttttctttaaatcagccaccttggcagtgatgctcctacaacaattggcatggacagtgg |
345 |
Q |
| |
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|||||| |||||||||||||| ||||||||||| | |||| | |||||||||||||||||| |||||||| || | ||||||||||||||| ||||||| |
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| T |
16643447 |
ttaacctctaacctcctaaattttttccaatcatgtagggctgcctttaaatcagccacctttgcagtgatacttcgacaacaattggcatgaacagtgg |
16643546 |
T |
|
| Q |
346 |
ttacagccctaaaatctttactatcttggcaaaatccactaaaatagagggtatccaagaaccttgccttgattcccaaatctcgaaatataccaccttt |
445 |
Q |
| |
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| || ||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| |||||| |||||| | || || ||||||| | | |
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| T |
16643547 |
tcactgccctaaaatctttactatcttgacaaaaaccactaaaatagagagtatccaagaacctaaccttgagtcccaagtgtccaattataccatgtct |
16643646 |
T |
|
| Q |
446 |
aatgaggtcctcaagcacatcttgctccnnnnnnnctgtgaaattatctttcattccataccatgtctcaaacaaagatatggtcttgttgtttgatctc |
545 |
Q |
| |
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||||||||| ||| ||||||||||| ||||| |||| |||||| ||||||||||||| ||||||||||||||||||||||| || || || |
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| T |
16643647 |
aatgaggtcaagaagaacatcttgctctttttttcctgtggaattgtctttctttccataccatgtttcaaacaaagatatggtcttgttattggacctt |
16643746 |
T |
|
| Q |
546 |
acaaagaaaaatccagtattga |
567 |
Q |
| |
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|||||| ||||||| ||||||| |
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| T |
16643747 |
acaaagtaaaatccggtattga |
16643768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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