View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13626_low_4 (Length: 524)
Name: NF13626_low_4
Description: NF13626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13626_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 141; Significance: 1e-73; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 26042785 - 26042641
Alignment:
| Q |
18 |
gcatggaaccttgcaaccagataacgtgatagaccatttactagttgtatgtgcaaatcacattaatacaaggtttaaaggtacatgtgcaaaacttgtt |
117 |
Q |
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| T |
26042785 |
gcatggaaccttgcaaccagataacgtgatagaccatttactagttgtatgtgcaaatcacattaatacaaggtttaaagatacatgtgcaaaacttgtt |
26042686 |
T |
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| Q |
118 |
tcaatagtatttgattcagagatatcggaaatgcaaattggaaag |
162 |
Q |
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| T |
26042685 |
tcaatagtatttgattcagagatatcggaaatgcaaattggaaag |
26042641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 354 - 524
Target Start/End: Complemental strand, 26042446 - 26042276
Alignment:
| Q |
354 |
tgatttaagatgcaatttgtttttcttaactagtattttaggaacatgggttaacatgacnnnnnnnaatgagaaatgttaatttatgtctttcgagcac |
453 |
Q |
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| T |
26042446 |
tgatttaagatgcaatttgtttttcctagctagtgtttcacaaacatgggttaacatgactttttttaataagaaatgttaatttatgtctttgaagcac |
26042347 |
T |
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| Q |
454 |
acctttagaaactaaacataaaagttttttcttgaaaataatgcattcaatattttgaaagaatcaaattt |
524 |
Q |
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| T |
26042346 |
acctttagaaacaaaacatgaaagttttttcttgaaaataatgcattcaatatcttaaaagtataaaattt |
26042276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 199 - 281
Target Start/End: Complemental strand, 26042605 - 26042523
Alignment:
| Q |
199 |
taacttaacatttactacttgtatttcaaggaatcactacnnnnnnnagaaaaatgttaaaccagtgtttttgggatattaga |
281 |
Q |
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| T |
26042605 |
taacttaacatttattacttgtatttgaaggaatcactattttatttagaaaaatgttaaactagtgtttttgggatattaga |
26042523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 514
Target Start/End: Complemental strand, 22348791 - 22348737
Alignment:
| Q |
460 |
agaaactaaacataaaagttttttcttgaaaataatgcattcaatattttgaaag |
514 |
Q |
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| T |
22348791 |
agaaactaaatataaaaatattttcttgaaaattgtgcattcaatattttaaaag |
22348737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 506
Target Start/End: Complemental strand, 43393416 - 43393367
Alignment:
| Q |
457 |
tttagaaactaaacataaaagttttttcttgaaaataatgcattcaatat |
506 |
Q |
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| T |
43393416 |
tttagaaactaaacatagaagtttattcttggaaatgttgcattcaatat |
43393367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 462 - 514
Target Start/End: Original strand, 17290274 - 17290326
Alignment:
| Q |
462 |
aaactaaacataaaagttttttcttgaaaataatgcattcaatattttgaaag |
514 |
Q |
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| T |
17290274 |
aaactaaatataaaagctttttcttgaaaatgatgcatttaatactttaaaag |
17290326 |
T |
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