View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13626_low_5 (Length: 500)
Name: NF13626_low_5
Description: NF13626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13626_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 20 - 490
Target Start/End: Complemental strand, 39584668 - 39584195
Alignment:
| Q |
20 |
ctcactccaatccttaatcgcgcgctttcctccgtcgctggttttcccacgttcacggtaatactactccgattacactacttttaacatgctctaatta |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39584668 |
ctcactccaatccttaatcgcgcgctttcctccgtcgctggttttcccacgtccacggtaatactactccgattacactacttttaacatgctctaatta |
39584569 |
T |
|
| Q |
120 |
tttatcaattcattattccatcatttttcaccatgttgtagaataatttacatgaatgcaagatgaacttatcattattgatccctcnnnnnnnnnnnnn |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39584568 |
tttatcaattcattattccatcatttttcaccatgttgtagaataatttacatgaatgcaagatgaacttatcattattgatccctcaaaaaaaaaaaaa |
39584469 |
T |
|
| Q |
220 |
n--gaacttatcattattgatgcattgcacatatactataatttctgttttcttttttcttcaataaaattataatataatg-tttcagttagttttcct |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
39584468 |
aaagaacttatcattattgatgcattgcacatatactataatttctgttttcttttttcttcaataaaattataatataatgctttcagttagttttcct |
39584369 |
T |
|
| Q |
317 |
gttattgtacaaatttgtctaataatatgtcaattttaatatgatgatttcagttagtttttctgtgacttgtgtacaaaaaatgtgaatacaagttggt |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39584368 |
gttattgtacaaatttgtctaataatatgtcaattttaatatgatgatttcagttagtttttctgtgacttgtgtacaaaaaatgtgaatacaagttggt |
39584269 |
T |
|
| Q |
417 |
atataacagtgagttcttcggtggtccaccgtgaaccactaaaaaattatagaaattccatagcggttgatgat |
490 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
39584268 |
atataacagtgagttcttcggtggtccaccgtgaaccactaaaaaattatagaaatttcatagcggttgatgat |
39584195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University