View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13626_low_6 (Length: 422)

Name: NF13626_low_6
Description: NF13626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13626_low_6
NF13626_low_6
[»] chr1 (2 HSPs)
chr1 (28-414)||(51119369-51119770)
chr1 (214-304)||(25590744-25590835)
[»] chr3 (2 HSPs)
chr3 (95-364)||(1663250-1663529)
chr3 (238-316)||(51810551-51810630)
[»] chr4 (8 HSPs)
chr4 (95-320)||(28964694-28964917)
chr4 (105-305)||(7043244-7043448)
chr4 (214-319)||(11494107-11494213)
chr4 (214-319)||(9881272-9881378)
chr4 (237-319)||(32347602-32347683)
chr4 (237-305)||(26905394-26905461)
chr4 (213-300)||(25170244-25170330)
chr4 (237-303)||(24520783-24520848)
[»] chr2 (4 HSPs)
chr2 (231-365)||(12635115-12635250)
chr2 (103-165)||(12644630-12644692)
chr2 (214-305)||(40498002-40498092)
chr2 (233-322)||(6962116-6962206)
[»] chr6 (1 HSPs)
chr6 (214-305)||(29010837-29010928)
[»] chr8 (1 HSPs)
chr8 (214-330)||(26794267-26794384)
[»] chr5 (2 HSPs)
chr5 (307-365)||(40905516-40905574)
chr5 (214-253)||(14234156-14234195)
[»] chr7 (1 HSPs)
chr7 (237-366)||(8265811-8265942)
[»] scaffold0019 (1 HSPs)
scaffold0019 (214-305)||(59489-59579)


Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 28 - 414
Target Start/End: Complemental strand, 51119770 - 51119369
Alignment:
Q  28 tcaactttcatctcataaaactttaatggcgtctatgtttcagaattatattcttttctctctgttagatcaaa-----------atgcgcaacataagt 116  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||           |||||||||||||||    
T  51119770 tcaactttcatctcataaaactttaatgacgtctatgtttcacaattatattcttttctctctgttagatcaaactatgatcaaaatgcgcaacataagt 51119671  T
Q  117 gcttttcataataagctgtttcaagcaagatgagaaaataacaaacaaacttgtaaaactgagagaatagagaatggagagtttacttgtaattgttaat 216  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  51119670 gtttttcataataagctgtttcaagcaagatgagaaaataacaaacaaacttgtaaaactgagagaatagagaatgaagagtttacttgtaattgttaat 51119571  T
Q  217 ctcattaagaattaaatgtacacattacaaagccttttatatgcaaatataacacttacttgtagcacaagctatctaactaac----taacacgttttg 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||    
T  51119570 ctcattaagaattaaatgtacacattacaaagccttttatatgcaaatataacacttacttgtagcacaagctatctaactaactaactaacacgttttg 51119471  T
Q  313 taacaaaattctaactaatttgttacatgggagttatggattaaatcttaacactctcttcaacaacacttcttcatgtctttctgttttgtttttcatc 412  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51119470 taacaaaattctaactaacttgttacatgggagttatgaattaaatcttaacactctcttcaacaacacttcttcatgtctttctgttttgtttttcatc 51119371  T
Q  413 tc 414  Q
    ||    
T  51119370 tc 51119369  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 214 - 304
Target Start/End: Original strand, 25590744 - 25590835
Alignment:
Q  214 aatctcattaagaattaaatgtacacattacaaagccttt-tatatgcaaatataacacttacttgtagcacaagctatctaactaactaac 304  Q
    |||||||||||||| | ||||||||| ||||||||||||| |||| |||||  |||||||| |||||| || || |||||| ||||||||||    
T  25590744 aatctcattaagaagtgaatgtacacgttacaaagcctttatataagcaaaactaacacttgcttgtaacataacctatctcactaactaac 25590835  T

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Target: chr3 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 95 - 364
Target Start/End: Complemental strand, 1663529 - 1663250
Alignment:
Q  95 gatcaaaatgcgcaacataagtgcttttcataataagctgtttcaagcaagatgagaaaataacaaacaaacttgtaaaactgagagaatagagaatgga 194  Q
    |||||| ||| | ||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||| ||||| |||  ||||||||||    
T  1663529 gatcaatatgtgtaacataagtgcttttcagaataagctggtttaagcaagatgagaaaataacaaacaaacttgtaagactgacagagaagagaatgga 1663430  T
Q  195 gag--tttacttgtaattgttaatctcattaagaattaaatgtacacattacaaagccttttatatgcaaatataacacttacttgtagcacaagctatc 292  Q
    |||  ||| ||||||||||| |||||||||||||||| ||||||||| |||||||| |||| ||| |||||||||||||||  |||||||||||||||||    
T  1663429 gagagtttgcttgtaattgtgaatctcattaagaattgaatgtacaccttacaaagactttcataggcaaatataacacttgtttgtagcacaagctatc 1663330  T
Q  293 taac--------taactaacacgttttgtaacaaaattctaactaatttgttacatgggagttatggattaaatcttaac 364  Q
    ||||        ||||||| | |||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||    
T  1663329 taactaacaaactaactaagaagttttgtaacaaaattctaactaacttgctacatggcagttatggattaaatcttaac 1663250  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 238 - 316
Target Start/End: Complemental strand, 51810630 - 51810551
Alignment:
Q  238 acattacaaagccttt-tatatgcaaatataacacttacttgtagcacaagctatctaactaactaacacgttttgtaac 316  Q
    |||||||||||||||| |||| |||||  ||||| || ||||||||||||||||||| ||| | ||||  ||||||||||    
T  51810630 acattacaaagcctttatataggcaaaactaacatttgcttgtagcacaagctatctcactgattaactagttttgtaac 51810551  T

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Target: chr4 (Bit Score: 120; Significance: 3e-61; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 95 - 320
Target Start/End: Original strand, 28964694 - 28964917
Alignment:
Q  95 gatcaaaatgcgcaacataagtgcttttcataataagctgtttcaagcaagatgagaaaataacaaacaaacttgtaaaactgagagaatagagaatgga 194  Q
    |||||||||||||||||||||||||||||   ||||||||||| ||| ||||||||||| ||||||||    ||||||||||||||||  ||||||||||    
T  28964694 gatcaaaatgcgcaacataagtgcttttctagataagctgttttaagtaagatgagaaattaacaaac----ttgtaaaactgagagagaagagaatgga 28964789  T
Q  195 gag--tttacttgtaattgttaatctcattaagaattaaatgtacacattacaaagccttttatatgcaaatataacacttacttgtagcacaagctatc 292  Q
    |||  ||| ||||||||||| |||||||||||||||| |||| |||||||||||||||||||||| ||||||| ||||||| ||||||| ||||||||||    
T  28964790 gagagtttgcttgtaattgtgaatctcattaagaattgaatgcacacattacaaagccttttataagcaaatacaacacttgcttgtagtacaagctatc 28964889  T
Q  293 taactaactaacacgttttgtaacaaaa 320  Q
    |||||||| ||||  |||||||| ||||    
T  28964890 taactaacaaacaaattttgtaagaaaa 28964917  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 105 - 305
Target Start/End: Original strand, 7043244 - 7043448
Alignment:
Q  105 cgcaacataagtgcttttcataataagctgtttcaagcaagatgagaaaataacaaacaaacttgtaaaactgaga--gaatagagaatggagag--ttt 200  Q
    |||| ||||||||||||||  |||||| ||||| ||||||||||| | |||||||||||||  |||  || | |||  ||  |||||||||||||  |||    
T  7043244 cgcagcataagtgcttttctcaataagttgttttaagcaagatga-agaataacaaacaaaactgttgaagttagaaagagaagagaatggagagagttt 7043342  T
Q  201 acttgtaattgttaatctcattaagaattaaatgtacacattacaaagccttttatatgcaaatata--acacttacttgtagcacaagctatctaacta 298  Q
     ||||||||  | ||||||||||||   | ||||||||||||||| ||||||||||| | | |||||  |||||| ||||||||||||||||||||||||    
T  7043343 gcttgtaata-tgaatctcattaagttgtgaatgtacacattacatagccttttataggtatatatatcacacttgcttgtagcacaagctatctaacta 7043441  T
Q  299 actaaca 305  Q
    |||||||    
T  7043442 actaaca 7043448  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 214 - 319
Target Start/End: Complemental strand, 11494213 - 11494107
Alignment:
Q  214 aatctcattaagaattaaatgtacacattacaaagcct-tttatatgcaaatataacacttacttgtagcacaagctatctaactaactaacacgttttg 312  Q
    |||||||||||||| | ||||||||||||||||||||| | |||| |||||  ||| |||| |||||||||||| |||||| || |||||||  ||||||    
T  11494213 aatctcattaagaagtgaatgtacacattacaaagcctatatataggcaaaactaatacttgcttgtagcacaaactatctcacaaactaactagttttg 11494114  T
Q  313 taacaaa 319  Q
    |||||||    
T  11494113 taacaaa 11494107  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 214 - 319
Target Start/End: Complemental strand, 9881378 - 9881272
Alignment:
Q  214 aatctcattaagaattaaatgtacacattacaaagcc-ttttatatgcaaatataacacttacttgtagcacaagctatctaactaactaacacgttttg 312  Q
    |||||||||||| | | |||||||||||||||||||| || |||| |||||  |||||||| ||||||| |||||||| ||   ||||||||  ||||||    
T  9881378 aatctcattaagtagtgaatgtacacattacaaagccgttatataggcaaaactaacactttcttgtagaacaagctaactccataactaactagttttg 9881279  T
Q  313 taacaaa 319  Q
    |||||||    
T  9881278 taacaaa 9881272  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 237 - 319
Target Start/End: Original strand, 32347602 - 32347683
Alignment:
Q  237 cacattacaaagccttttatatgcaaatataacacttacttgtagcacaagctatctaactaactaacacgttttgtaacaaa 319  Q
    |||| |||||||||||||||| ||| | ||| ||||| ||||||| |||||||||||||||||||||||  ||||| ||||||    
T  32347602 cacaatacaaagccttttataggcaca-atatcacttgcttgtagaacaagctatctaactaactaacaaattttgaaacaaa 32347683  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 305
Target Start/End: Complemental strand, 26905461 - 26905394
Alignment:
Q  237 cacattacaaagccttttatatgcaaatataacacttacttgtagcacaagctatctaactaactaaca 305  Q
    |||| |||||||||||||||| ||| | ||| ||||| ||| ||| |||||||||||||||||||||||    
T  26905461 cacaatacaaagccttttataggcata-atagcacttgcttttagaacaagctatctaactaactaaca 26905394  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 213 - 300
Target Start/End: Complemental strand, 25170330 - 25170244
Alignment:
Q  213 taatctcattaagaattaaatgtacacattacaaagccttttatatgcaaatataacacttacttgtagcacaagctatctaactaac 300  Q
    |||||||||||||| || ||  | |||| |||||||||||||||| ||| | ||| ||||| ||||||| |||| |||||||||||||    
T  25170330 taatctcattaagacttgaagtttcacaatacaaagccttttataggcaca-atatcacttgcttgtagaacaatctatctaactaac 25170244  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 303
Target Start/End: Original strand, 24520783 - 24520848
Alignment:
Q  237 cacattacaaagccttttatatgcaaatataacacttacttgtagcacaagctatctaactaactaa 303  Q
    |||| |||||||||||||||| ||| | ||| ||||| ||||||| ||||||| |||||||||||||    
T  24520783 cacaatacaaagccttttataggcaca-atatcacttgcttgtagaacaagctgtctaactaactaa 24520848  T

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Target: chr2 (Bit Score: 64; Significance: 8e-28; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 231 - 365
Target Start/End: Complemental strand, 12635250 - 12635115
Alignment:
Q  231 aatgtacacattacaaagccttttatatgcaaatataacacttacttgtagcacaagctatctaactaactaacacgttttgt-aacaaaattctaacta 329  Q
    ||||||||||||||||||||||||||| | ||||||||||||| ||||||||| ||| ||||| ||||||||||| ||||||| || ||||||||||| |    
T  12635250 aatgtacacattacaaagccttttataggaaaatataacacttgcttgtagcataagttatctcactaactaacaagttttgtaaaaaaaattctaacca 12635151  T
Q  330 atttgttacatgggagttatggattaaatcttaaca 365  Q
    | ||| ||  ||| ||||||| ||||| ||||||||    
T  12635150 acttgctatgtggcagttatgtattaactcttaaca 12635115  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 103 - 165
Target Start/End: Complemental strand, 12644692 - 12644630
Alignment:
Q  103 tgcgcaacataagtgcttttcataataagctgtttcaagcaagatgagaaaataacaaacaaa 165  Q
    |||||||||||||||| ||||| |||||| |||||| |||||||||||||||||  |||||||    
T  12644692 tgcgcaacataagtgcctttcaaaataagttgtttcgagcaagatgagaaaatagaaaacaaa 12644630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 305
Target Start/End: Complemental strand, 40498092 - 40498002
Alignment:
Q  214 aatctcattaagaattaaatgtacacattacaaagccttttatatgcaaatataacacttacttgtagcacaagctatctaactaactaaca 305  Q
    |||||||||||||||||||  | |||| |||||||||||||||||||| | ||| ||||| |  |||| |||||| ||||||| ||||||||    
T  40498092 aatctcattaagaattaaagttgcacaatacaaagccttttatatgcaca-atagcacttgccggtagaacaagcaatctaacaaactaaca 40498002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 233 - 322
Target Start/End: Complemental strand, 6962206 - 6962116
Alignment:
Q  233 tgtacacattacaaagccttt-tatatgcaaatataacacttacttgtagcacaagctatctaactaactaacacgttttgtaacaaaatt 322  Q
    ||||||||||||||||||||| |||| |||||  |||||||| ||||||| ||||| |  ||  |||||||||  ||||||||||||||||    
T  6962206 tgtacacattacaaagcctttatataggcaaaattaacacttgcttgtagaacaagatgacttcctaactaactagttttgtaacaaaatt 6962116  T

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Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 214 - 305
Target Start/End: Original strand, 29010837 - 29010928
Alignment:
Q  214 aatctcattaagaattaaatgtacacattacaaagccttttatatgcaaatataacacttacttgtagcacaagctatctaactaactaaca 305  Q
    |||||||||||||| | ||||||||||||||||||||||||||| |||||||| |  ||| ||||||||||||||||||| |||||||||||    
T  29010837 aatctcattaagaagtgaatgtacacattacaaagccttttataggcaaatatgatgcttgcttgtagcacaagctatctcactaactaaca 29010928  T

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Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 214 - 330
Target Start/End: Original strand, 26794267 - 26794384
Alignment:
Q  214 aatctcattaagaattaaatgtacacattacaaagccttt-tatatgcaaatataacacttacttgtagcacaagctatctaactaactaacacgttttg 312  Q
    |||||||||||||| | ||||||||||||||||||||||| |||| |||||  |||||||| ||||||| |||||||| ||  |||||||||  ||||||    
T  26794267 aatctcattaagaagtgaatgtacacattacaaagcctttatataggcaaaactaacacttgcttgtagaacaagctaactccctaactaactagttttg 26794366  T
Q  313 taacaaaattctaactaa 330  Q
    |||||||||  |||||||    
T  26794367 taacaaaatcttaactaa 26794384  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 307 - 365
Target Start/End: Complemental strand, 40905574 - 40905516
Alignment:
Q  307 gttttgtaacaaaattctaactaatttgttacatgggagttatggattaaatcttaaca 365  Q
    |||||||||||||||||||||||| ||| ||||||| |||||| |||||||||||||||    
T  40905574 gttttgtaacaaaattctaactaacttgctacatggcagttatagattaaatcttaaca 40905516  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 214 - 253
Target Start/End: Complemental strand, 14234195 - 14234156
Alignment:
Q  214 aatctcattaagaattaaatgtacacattacaaagccttt 253  Q
    |||||||||||||| | |||||||||||||||||||||||    
T  14234195 aatctcattaagaagtgaatgtacacattacaaagccttt 14234156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 237 - 366
Target Start/End: Complemental strand, 8265942 - 8265811
Alignment:
Q  237 cacattacaaagccttt-tatatgcaaatataacacttacttgtagcacaagctatctaactaactaacacgttttgtaacaaaattctaactaatttg- 334  Q
    ||||||||||||||||| |||| |||||  |||||||| ||||||| |||||||| ||  |||||||||  ||||| |||||||||   |||||| |||     
T  8265942 cacattacaaagcctttatataggcaaaactaacactttcttgtagaacaagctaacttcctaactaactagttttctaacaaaatctcaactaacttgc 8265843  T
Q  335 ttacatgggagttatggattaaatcttaacac 366  Q
    |||  ||| ||||||| ||||| |||||||||    
T  8265842 ttaggtggcagttatgaattaattcttaacac 8265811  T

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Target: scaffold0019 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 214 - 305
Target Start/End: Original strand, 59489 - 59579
Alignment:
Q  214 aatctcattaagaattaaatgtacacattacaaagccttttatatgcaaatataacacttacttgtagcacaagctatctaactaactaaca 305  Q
    ||||||||||||| || ||  | |||| |||||||||||||||| ||| | ||  ||||| ||||||| ||||||||| |||||||||||||    
T  59489 aatctcattaagacttgaagttgcacaatacaaagccttttataggcaca-atggcacttgcttgtagaacaagctatttaactaactaaca 59579  T

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