View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13627_high_2 (Length: 348)
Name: NF13627_high_2
Description: NF13627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13627_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 16 - 334
Target Start/End: Original strand, 49273385 - 49273702
Alignment:
| Q |
16 |
catgtagctttttcttggttgctagtttttaaatctgaattaggttgcttagagctgcattttctattggtacttaatactagttgaatgtgattatact |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49273385 |
catgtagctttttcttggttgctagtttttaaatctgaattaggttgcttagagctgcattttctattggtacttaatactagttgaatgtgattatact |
49273484 |
T |
|
| Q |
116 |
tgaattatttgcgaaattctcttctgattgtgaaaaaactcttgtttccaatttcaatggagtcattccttggaataggagcattctttcagtatgacgt |
215 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
49273485 |
tgaattatttgtgaaattctcttctgattgtgaaaaaactcttgtttccaatttcaatggagtcattccttggaataggagcgttctttcagtatgccgt |
49273584 |
T |
|
| Q |
216 |
tcctttaacaggaatgatttggtaagttccctccctcctcttaaatcttatcttttggttgtannnnnnnnnactttgcctgttaatttttagccattat |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
49273585 |
tcctttaacaggaatgatttggtaagttccctccctcctcttaaatcttatcttttggttgta-ttttttttactttgcctgttaatttttagccattat |
49273683 |
T |
|
| Q |
316 |
ttgtgacttacaatttgat |
334 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
49273684 |
ttgtgacttacaatttgat |
49273702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 16 - 261
Target Start/End: Complemental strand, 49273995 - 49273751
Alignment:
| Q |
16 |
catgtagctttttcttggttgctagtttttaaatctgaattaggttgcttag-agctgcattttctattggtacttaatactagttgaatgtgattatac |
114 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| || ||||||| ||| |||| |||||| | ||||||||| ||||| ||||||||||||||||| |
|
|
| T |
49273995 |
catgaagctttttcttggttgctagtttttaaatctggatcaggttgcgtaggagcttcatttt-tgttggtacttcatactggttgaatgtgattatac |
49273897 |
T |
|
| Q |
115 |
ttgaattatttgcgaaattctcttctgattgtgaaaaaactcttgtttccaatttcaatggagtcattccttggaataggagcattctttcagtatgacg |
214 |
Q |
| |
|
||| ||||| | ||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
49273896 |
ttgtattatatatgaaattctcggctgattgtgaaaaaactag-gattccaatttcaatggagtcattccttggaataggagcgttctttcagtatgccg |
49273798 |
T |
|
| Q |
215 |
ttcctttaacaggaatgatttggtaagttccctccctcctcttaaat |
261 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
49273797 |
ttcctttaacaggaatgatttggcgagttccctccctcctcttaaat |
49273751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 16 - 269
Target Start/End: Original strand, 49255637 - 49255890
Alignment:
| Q |
16 |
catgtagctttttcttggttgctagtttttaaatctgaattaggttgcttag-agctgcattttctattggtacttaatactagttgaatgtgattatac |
114 |
Q |
| |
|
|||||||| |||| |||||| ||||||||||||||| ||||||| |||||| |||||||||||||||||| |||| ||||| ||||||||||||||| | |
|
|
| T |
49255637 |
catgtagcattttgttggttattagtttttaaatctggattaggtagcttaggagctgcattttctattggcacttcatactggttgaatgtgattatcc |
49255736 |
T |
|
| Q |
115 |
ttgaattatttgcgaaattctcttctgattgtgaaaaaactcttgtttccaatttcaatggagtcattccttggaataggagcattctttcagtatgacg |
214 |
Q |
| |
|
||| ||||| | |||||||||| |||||||||||||||| | |||| ||||||||||||||||||| ||||||||| | ||||||| |||| |
|
|
| T |
49255737 |
ttggattatatatgaaattctctgctgattgtgaaaaaacgc-ggtttacaatttcaatggagtcatttgatggaataggtgagttctttcgctatgcta |
49255835 |
T |
|
| Q |
215 |
ttcctttaacaggaatgatttggtaagttccctccctcctcttaaatcttatctt |
269 |
Q |
| |
|
|||||| | | ||||||||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
49255836 |
ttccttcagctggaatgatttggtgagttccctccctcctcttaaattttatctt |
49255890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 16 - 254
Target Start/End: Original strand, 49268361 - 49268598
Alignment:
| Q |
16 |
catgtagctttttcttggttgctagtttttaaatctgaattaggttgcttag-agctgcattttctattggtacttaatactagttgaatgtgattatac |
114 |
Q |
| |
|
||||||||||||| |||| || ||||||||||||||| |||||||||||||| ||||||| ||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
49268361 |
catgtagctttttgttggctgttagtttttaaatctggattaggttgcttaggagctgcactttctattggtacttcatactggttgaatgtgattatac |
49268460 |
T |
|
| Q |
115 |
ttgaattatttgcgaaattctcttctgattgtgaaaaaactcttgtttccaatttcaatggagtcattccttggaataggagcattctttcagtatgacg |
214 |
Q |
| |
|
||| ||||| | ||||||||| ||||||||||| |||||| | |||| |||||||||||| ||||||||||| |||||| ||||||| || | |
|
|
| T |
49268461 |
ttggattatatatgaaattctccactgattgtgaagaaactc-gggttccgatttcaatggagccattccttggagtaggagagttctttcgatacgcta |
49268559 |
T |
|
| Q |
215 |
ttcctttaacaggaatgatttggtaagttccctccctcct |
254 |
Q |
| |
|
|||| | | ||||||||||||||| ||||| ||||||||| |
|
|
| T |
49268560 |
ttccatcagcaggaatgatttggt-agttcactccctcct |
49268598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 117
Target Start/End: Original strand, 29356892 - 29356986
Alignment:
| Q |
24 |
tttttcttggttgctagtttttaaatctgaattaggttgctta-gagctgcattttctattggtacttaatactagttgaatgtgattatacttg |
117 |
Q |
| |
|
||||| ||||||||||||||| |||||| ||||||| | ||| |||| | |||||||||||| |||| || || ||| ||||||||||| |||| |
|
|
| T |
29356892 |
tttttattggttgctagttttcaaatctagattaggtggtttaggagcagaattttctattgggacttcatcctggtttaatgtgattattcttg |
29356986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University