View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13627_high_4 (Length: 254)

Name: NF13627_high_4
Description: NF13627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13627_high_4
NF13627_high_4
[»] chr8 (1 HSPs)
chr8 (1-240)||(41966250-41966483)
[»] chr2 (34 HSPs)
chr2 (164-239)||(10372388-10372463)
chr2 (59-239)||(10336272-10336437)
chr2 (168-236)||(12005658-12005726)
chr2 (60-122)||(9292357-9292419)
chr2 (60-122)||(9357612-9357674)
chr2 (167-240)||(9275051-9275124)
chr2 (164-236)||(10348309-10348381)
chr2 (59-122)||(9321404-9321467)
chr2 (59-122)||(9060774-9060837)
chr2 (167-237)||(9283720-9283790)
chr2 (60-118)||(9283833-9283891)
chr2 (59-118)||(8573142-8573201)
chr2 (60-122)||(9316457-9316519)
chr2 (60-122)||(9329028-9329090)
chr2 (174-236)||(12018422-12018484)
chr2 (167-236)||(10353651-10353720)
chr2 (171-235)||(8573037-8573101)
chr2 (168-224)||(14550902-14550958)
chr2 (174-237)||(8579032-8579095)
chr2 (168-227)||(12012095-12012154)
chr2 (191-234)||(16269456-16269499)
chr2 (16-118)||(11987124-11987226)
chr2 (167-236)||(9292458-9292527)
chr2 (187-236)||(9316578-9316627)
chr2 (187-236)||(9329149-9329198)
chr2 (167-236)||(9357710-9357779)
chr2 (179-227)||(9365188-9365236)
chr2 (62-122)||(10372301-10372361)
chr2 (168-236)||(11987021-11987089)
chr2 (59-118)||(7115282-7115341)
chr2 (67-122)||(10348227-10348282)
chr2 (63-122)||(10353553-10353612)
chr2 (16-131)||(12018506-12018621)
chr2 (59-119)||(9274940-9275000)
[»] chr3 (2 HSPs)
chr3 (60-122)||(37462927-37462989)
chr3 (178-236)||(37463039-37463097)
[»] scaffold0667 (1 HSPs)
scaffold0667 (59-236)||(4911-5076)
[»] chr1 (9 HSPs)
chr1 (16-123)||(29442965-29443072)
chr1 (2-119)||(29452955-29453072)
chr1 (173-237)||(29423801-29423865)
chr1 (61-123)||(29467428-29467489)
chr1 (168-227)||(29442867-29442926)
chr1 (168-227)||(29452859-29452918)
chr1 (176-227)||(29467333-29467384)
chr1 (65-123)||(29423702-29423760)
chr1 (168-217)||(29463510-29463559)
[»] chr4 (2 HSPs)
chr4 (62-122)||(26575304-26575364)
chr4 (175-236)||(26575411-26575472)


Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 41966483 - 41966250
Alignment:
Q  1 tttttagagctaaatagtctgacatgtgaatcaaaagtagagagttgttgatcaaaagaccaagagattctgaggagtttgtaatcgctggttaatggat 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  41966483 tttttagagctaaatagcctgacatgtgaatcaaaagtagagagttgttgatcaaaagaccaagagattctgaggagtttgtgatcgctggttaatggat 41966384  T
Q  101 caaaaccgaatccgtgaacgcaataggcaaagttgatgtcgtcaggttcagaacgacggggaggaataggaataggaatagggagaaaagggataatccg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||    
T  41966383 caaaaccgaatccgtgaacgcaataggcaaagttgatgtcgtcaggttcagaacgacggggaggaataggaa------tagggagaaaagggataatccg 41966290  T
Q  201 atgtttacagatgttagggttccagaatgtgatttcattt 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  41966289 atgtttacagatgttagggttccagaatgtgatttcattt 41966250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 164 - 239
Target Start/End: Original strand, 10372388 - 10372463
Alignment:
Q  164 gaataggaataggaatagggagaaaagggataatccgatgtttacagatgttagggttccagaatgtgatttcatt 239  Q
    ||||||||||||||| ||||||||||||||||| || |||||||| | ||||||||||||||||||||||||||||    
T  10372388 gaataggaataggaagagggagaaaagggataaccctatgtttacgggtgttagggttccagaatgtgatttcatt 10372463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 59 - 239
Target Start/End: Original strand, 10336272 - 10336437
Alignment:
Q  59 accaagagattctgaggagtttgtaatcgctggttaatggatcaaaaccgaatccgtgaacgcaataggcaaagttgatgtcgtcaggttcagaacgacg 158  Q
    |||||||||||||||||||||||||||||  || ||||| ||||||||||||||||||||||||  | ||      ||||| ||||| || |||||||      
T  10336272 accaagagattctgaggagtttgtaatcggcggataatgaatcaaaaccgaatccgtgaacgcataaagc------gatgttgtcagattgagaacga-- 10336363  T
Q  159 gggaggaataggaataggaatagggagaaaagggataatccgatgtttacagatgttagggttccagaatgtgatttcatt 239  Q
      |||     |||||||||| ||||||| ||||||||||||||||||||| |||| |||| || ||||||| |||||||||    
T  10336364 --gag-----ggaataggaagagggagataagggataatccgatgtttacggatggtaggattacagaatgcgatttcatt 10336437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 168 - 236
Target Start/End: Complemental strand, 12005726 - 12005658
Alignment:
Q  168 aggaataggaatagggagaaaagggataatccgatgtttacagatgttagggttccagaatgtgatttc 236  Q
    |||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||| ||||||||    
T  12005726 aggaataggaatagggagattagggataatccgatgtttacggatgttagggttccagaaagtgatttc 12005658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 60 - 122
Target Start/End: Original strand, 9292357 - 9292419
Alignment:
Q  60 ccaagagattctgaggagtttgtaatcgctggttaatggatcaaaaccgaatccgtgaacgca 122  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||    
T  9292357 ccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgca 9292419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 60 - 122
Target Start/End: Original strand, 9357612 - 9357674
Alignment:
Q  60 ccaagagattctgaggagtttgtaatcgctggttaatggatcaaaaccgaatccgtgaacgca 122  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||    
T  9357612 ccaagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgca 9357674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 167 - 240
Target Start/End: Original strand, 9275051 - 9275124
Alignment:
Q  167 taggaataggaatagggagaaaagggataatccgatgtttacagatgttagggttccagaatgtgatttcattt 240  Q
    |||| ||||||| ||||||||||||||||||||||||||||| | ||||||||||||||| ||| |||||||||    
T  9275051 taggtataggaagagggagaaaagggataatccgatgtttaccggtgttagggttccagattgtaatttcattt 9275124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 164 - 236
Target Start/End: Original strand, 10348309 - 10348381
Alignment:
Q  164 gaataggaataggaatagggagaaaagggataatccgatgtttacagatgttagggttccagaatgtgatttc 236  Q
    ||||||||||||||| ||||||||||||||||||  ||||||||| | ||||||||||||||| |||||||||    
T  10348309 gaataggaataggaagagggagaaaagggataatgtgatgtttacgggtgttagggttccagattgtgatttc 10348381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 59 - 122
Target Start/End: Original strand, 9321404 - 9321467
Alignment:
Q  59 accaagagattctgaggagtttgtaatcgctggttaatggatcaaaaccgaatccgtgaacgca 122  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||| || ||||||||    
T  9321404 accaagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaaaccatgaacgca 9321467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 59 - 122
Target Start/End: Complemental strand, 9060837 - 9060774
Alignment:
Q  59 accaagagattctgaggagtttgtaatcgctggttaatggatcaaaaccgaatccgtgaacgca 122  Q
    |||||| ||||||||||||||||||||||  ||| ||||||||||||||||| |||||||||||    
T  9060837 accaagtgattctgaggagtttgtaatcggcggtgaatggatcaaaaccgaagccgtgaacgca 9060774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 167 - 237
Target Start/End: Complemental strand, 9283790 - 9283720
Alignment:
Q  167 taggaataggaatagggagaaaagggataatccgatgtttacagatgttagggttccagaatgtgatttca 237  Q
    |||| ||||||| |||||||||||||||||||| |||||||| | |||||| |||||||| ||||||||||    
T  9283790 tagggataggaagagggagaaaagggataatccaatgtttacgggtgttagtgttccagattgtgatttca 9283720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 60 - 118
Target Start/End: Complemental strand, 9283891 - 9283833
Alignment:
Q  60 ccaagagattctgaggagtttgtaatcgctggttaatggatcaaaaccgaatccgtgaa 118  Q
    ||||||||||| ||||||||||||||||| |||||| |||||||||||||| |||||||    
T  9283891 ccaagagattcggaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaa 9283833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 59 - 118
Target Start/End: Complemental strand, 8573201 - 8573142
Alignment:
Q  59 accaagagattctgaggagtttgtaatcgctggttaatggatcaaaaccgaatccgtgaa 118  Q
    |||||||||||| ||||||||||||||||  ||||||| ||||||||||||| |||||||    
T  8573201 accaagagattcggaggagtttgtaatcggcggttaatagatcaaaaccgaagccgtgaa 8573142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 122
Target Start/End: Original strand, 9316457 - 9316519
Alignment:
Q  60 ccaagagattctgaggagtttgtaatcgctggttaatggatcaaaaccgaatccgtgaacgca 122  Q
    |||||| |||||||||||||||||||| |  ||| |||||||||||||||| |||||||||||    
T  9316457 ccaagaaattctgaggagtttgtaatcacctgttgatggatcaaaaccgaagccgtgaacgca 9316519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 122
Target Start/End: Original strand, 9329028 - 9329090
Alignment:
Q  60 ccaagagattctgaggagtttgtaatcgctggttaatggatcaaaaccgaatccgtgaacgca 122  Q
    ||||| ||||||||||||||||||||| | || ||| |||||||||||||| |||||||||||    
T  9329028 ccaagcgattctgaggagtttgtaatcaccggataaaggatcaaaaccgaaaccgtgaacgca 9329090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 236
Target Start/End: Complemental strand, 12018484 - 12018422
Alignment:
Q  174 aggaatagggagaaaagggataatccgatgtttacagatgttagggttccagaatgtgatttc 236  Q
    |||||||||||||  |||||||||||||||||||| ||||| |||||||||||| | ||||||    
T  12018484 aggaatagggagatgagggataatccgatgtttacggatgtaagggttccagaaagcgatttc 12018422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 236
Target Start/End: Original strand, 10353651 - 10353720
Alignment:
Q  167 taggaataggaatagggagaaaagggataatccgatgtttacagatgttagggttccagaatgtgatttc 236  Q
    |||| ||||||| |||||||||||||||||||||||| |||| | |||| |||||||| | |||||||||    
T  10353651 tagggataggaagagggagaaaagggataatccgatgcttacgggtgttggggttccatattgtgatttc 10353720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 171 - 235
Target Start/End: Complemental strand, 8573101 - 8573037
Alignment:
Q  171 aataggaatagggagaaaagggataatccgatgtttacagatgttagggttccagaatgtgattt 235  Q
    |||||||| ||||||||||||||||||  ||||||||| | ||||||||||||||| || |||||    
T  8573101 aataggaagagggagaaaagggataatgtgatgtttacgggtgttagggttccagattgcgattt 8573037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 14550902 - 14550958
Alignment:
Q  168 aggaataggaatagggagaaaagggataatccgatgtttacagatgttagggttcca 224  Q
    ||||||| |||||||||||  ||||||||| |||||||||| |||||||||||||||    
T  14550902 aggaataagaatagggagatcagggataatgcgatgtttacggatgttagggttcca 14550958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 237
Target Start/End: Complemental strand, 8579095 - 8579032
Alignment:
Q  174 aggaatagggagaaaagggataatccgatgtttacagatgttagggttccagaatgtgatttca 237  Q
    |||||| |||||| |||||||||  |||||||||| |||||||||||||||||| | |||||||    
T  8579095 aggaatggggagataagggataactcgatgtttacggatgttagggttccagaaagcgatttca 8579032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 12012154 - 12012095
Alignment:
Q  168 aggaataggaatagggagaaaagggataatccgatgtttacagatgttagggttccagaa 227  Q
    |||||||| || |||||||  |||||||||| ||||||||| ||||||||||||||||||    
T  12012154 aggaatagaaacagggagattagggataatctgatgtttacggatgttagggttccagaa 12012095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 234
Target Start/End: Original strand, 16269456 - 16269499
Alignment:
Q  191 ggataatccgatgtttacagatgttagggttccagaatgtgatt 234  Q
    ||||||||| |||||||||| |||||||||||||||||||||||    
T  16269456 ggataatccaatgtttacaggtgttagggttccagaatgtgatt 16269499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 11987226 - 11987124
Alignment:
Q  16 agtctgacatgtgaatcaaaagtagagagttgttgatcaaaagaccaagagattctgaggagtttgtaatcgctggttaatggatcaaaaccgaatccgt 115  Q
    |||||||||| |||||||||||||  |   ||| |||||| | ||||||||||||||| |||||||||||||   |  || |||||||| ||||||||||    
T  11987226 agtctgacatatgaatcaaaagtacggttgtgtagatcaacaaaccaagagattctgatgagtttgtaatcggatgaaaaaggatcaaagccgaatccgt 11987127  T
Q  116 gaa 118  Q
    |||    
T  11987126 gaa 11987124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 236
Target Start/End: Original strand, 9292458 - 9292527
Alignment:
Q  167 taggaataggaatagggagaaaagggataatccgatgtttacagatgttagggttccagaatgtgatttc 236  Q
    |||| |||| || ||||||||||||||||||||||||||||    ||||||||||| ||| |||||||||    
T  9292458 tagggatagcaagagggagaaaagggataatccgatgtttatgagtgttagggttcaagactgtgatttc 9292527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 236
Target Start/End: Original strand, 9316578 - 9316627
Alignment:
Q  187 aaagggataatccgatgtttacagatgttagggttccagaatgtgatttc 236  Q
    ||||||||||| |||||||||| | ||||||||||||||| |||||||||    
T  9316578 aaagggataatacgatgtttacgggtgttagggttccagattgtgatttc 9316627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 236
Target Start/End: Original strand, 9329149 - 9329198
Alignment:
Q  187 aaagggataatccgatgtttacagatgttagggttccagaatgtgatttc 236  Q
    ||||||||||| |||||||||| | ||||||||||||||| |||||||||    
T  9329149 aaagggataatacgatgtttacgggtgttagggttccagattgtgatttc 9329198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 236
Target Start/End: Original strand, 9357710 - 9357779
Alignment:
Q  167 taggaataggaatagggagaaaagggataatccgatgtttacagatgttagggttccagaatgtgatttc 236  Q
    |||| ||||||| |||||| |||||||||||  ||||||||| ||||||| ||||||||| || ||||||    
T  9357710 tagggataggaagagggaggaaagggataatgtgatgtttacggatgttatggttccagattgagatttc 9357779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 9365188 - 9365236
Alignment:
Q  179 tagggagaaaagggataatccgatgtttacagatgttagggttccagaa 227  Q
    |||| ||| ||||||| ||||||||||||| ||||||||||||||||||    
T  9365188 taggaagataagggatgatccgatgtttacggatgttagggttccagaa 9365236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 122
Target Start/End: Original strand, 10372301 - 10372361
Alignment:
Q  62 aagagattctgaggagtttgtaatcgctggttaatggatcaaaaccgaatccgtgaacgca 122  Q
    ||||||||||||||||||||| ||||| || ||| | |||||||||||| || ||||||||    
T  10372301 aagagattctgaggagtttgtgatcgccggataaagaatcaaaaccgaagccatgaacgca 10372361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 236
Target Start/End: Complemental strand, 11987089 - 11987021
Alignment:
Q  168 aggaataggaatagggagaaaagggataatccgatgtttacagatgttagggttccagaatgtgatttc 236  Q
    ||||| ||| ||| |||||  |||||||||||||||||||| | |||||||||||||||| | ||||||    
T  11987089 aggaaaagggataaggagatgagggataatccgatgtttacgggtgttagggttccagaaagcgatttc 11987021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 118
Target Start/End: Complemental strand, 7115341 - 7115282
Alignment:
Q  59 accaagagattctgaggagtttgtaatcgctggttaatggatcaaaaccgaatccgtgaa 118  Q
    |||||||||||||||| |||||||||||    ||||| |||||||||||||| |||||||    
T  7115341 accaagagattctgagaagtttgtaatcatctgttaaaggatcaaaaccgaagccgtgaa 7115282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 122
Target Start/End: Original strand, 10348227 - 10348282
Alignment:
Q  67 attctgaggagtttgtaatcgctggttaatggatcaaaaccgaatccgtgaacgca 122  Q
    |||||||||||||||||||| | || || | ||||||||||||| |||||||||||    
T  10348227 attctgaggagtttgtaatcaccggatatttgatcaaaaccgaagccgtgaacgca 10348282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 63 - 122
Target Start/End: Original strand, 10353553 - 10353612
Alignment:
Q  63 agagattctgaggagtttgtaatcgctggttaatggatcaaaaccgaatccgtgaacgca 122  Q
    |||||||||||||||||||||||||| || ||  | |||||||||||| || ||||||||    
T  10353553 agagattctgaggagtttgtaatcgccggatacagaatcaaaaccgaagccatgaacgca 10353612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 131
Target Start/End: Complemental strand, 12018621 - 12018506
Alignment:
Q  16 agtctgacatgtgaatcaaaagtagagagttgttgatcaaaagaccaagagattctgaggagtttgtaatcgctggttaatggatcaaaaccgaatccgt 115  Q
    |||||||||| |||||||||||||  |   ||| |||||| | |||||||||||||||  ||||| |||||   ||  || |||||||||||||| ||||    
T  12018621 agtctgacatatgaatcaaaagtacggttgtgtagatcaacaaaccaagagattctgacaagtttataatcagaggacaaaggatcaaaaccgaagccgt 12018522  T
Q  116 gaacgcaataggcaaa 131  Q
     ||||||| |||||||    
T  12018521 aaacgcaaaaggcaaa 12018506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 9274940 - 9275000
Alignment:
Q  59 accaagagattctgaggagtttgtaatcgctggttaatggatcaaaaccgaatccgtgaac 119  Q
    |||| ||||||||||| ||||| ||||||| || ||| ||||||||||| || ||||||||    
T  9274940 accatgagattctgagaagtttataatcgccggataaaggatcaaaaccaaaaccgtgaac 9275000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 60 - 122
Target Start/End: Original strand, 37462927 - 37462989
Alignment:
Q  60 ccaagagattctgaggagtttgtaatcgctggttaatggatcaaaaccgaatccgtgaacgca 122  Q
    ||||||||||||||||||||||||||||| |||||| | |||||||||||| |||||||||||    
T  37462927 ccaagagattctgaggagtttgtaatcgccggttaaagaatcaaaaccgaagccgtgaacgca 37462989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 236
Target Start/End: Original strand, 37463039 - 37463097
Alignment:
Q  178 atagggagaaaagggataatccgatgtttacagatgttagggttccagaatgtgatttc 236  Q
    ||||||||||||||||||||| |||||||||   ||||||||||||||| |||||||||    
T  37463039 atagggagaaaagggataatcagatgtttacgtgtgttagggttccagattgtgatttc 37463097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 59 - 236
Target Start/End: Original strand, 4911 - 5076
Alignment:
Q  59 accaagagattctgaggagtttgtaatcgctggttaatggatcaaaaccgaatccgtgaacgcaataggcaaagttgatgtcgtcaggttcagaacgacg 158  Q
    ||||||||| |||||||| ||||||||||| |||||| |||||||||||||| |||||||||||  |||   |||| ||||||   | |  |||||||      
T  4911 accaagagagtctgaggattttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcataaggagcagttcatgtcg---gatggagaacga-- 5005  T
Q  159 gggaggaataggaataggaatagggagaaaagggataatccgatgtttacagatgttagggttccagaatgtgatttc 236  Q
     |||| ||||||  |||    ||||||||||||||||||  ||||||||| ||||||||||||||||| |||||||||    
T  5006 -ggagtaatagg--tag----agggagaaaagggataatgtgatgtttacggatgttagggttccagattgtgatttc 5076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 29443072 - 29442965
Alignment:
Q  16 agtctgacatgtgaatcaaaagtagagagttgttgatcaaaagaccaagagattctgaggagtttgtaatcgctggttaatggatcaaaaccgaatccgt 115  Q
    ||||| |||||||| |||||||||||| |||||    |||   | ||||||||||||| ||||||||||||| |||| ||||||||||||||||| ||||    
T  29443072 agtctaacatgtgattcaaaagtagagtgttgtaccccaacgaagcaagagattctgatgagtttgtaatcgttggtcaatggatcaaaaccgaagccgt 29442973  T
Q  116 gaacgcaa 123  Q
    ||| ||||    
T  29442972 gaatgcaa 29442965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 119
Target Start/End: Complemental strand, 29453072 - 29452955
Alignment:
Q  2 ttttagagctaaatagtctgacatgtgaatcaaaagtagagagttgttgatcaaaagaccaagagattctgaggagtttgtaatcgctggttaatggatc 101  Q
    |||| ||||| || ||||| |||||||||||| ||||||||  |||| ||||||     |||||||||||||||||||||||||||  | |||| |||||    
T  29453072 ttttcgagctgaagagtctcacatgtgaatcagaagtagagtattgtggatcaacgatacaagagattctgaggagtttgtaatcgacgtttaacggatc 29452973  T
Q  102 aaaaccgaatccgtgaac 119  Q
    |||||| || ||||||||    
T  29452972 aaaaccaaagccgtgaac 29452955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 237
Target Start/End: Original strand, 29423801 - 29423865
Alignment:
Q  173 taggaatagggagaaaagggataatccgatgtttacagatgttagggttccagaatgtgatttca 237  Q
    |||||||||||||  |||||||||| ||||||||||||||| ||||||||||||| | |||||||    
T  29423801 taggaatagggagggaagggataatgcgatgtttacagatggtagggttccagaaagcgatttca 29423865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 61 - 123
Target Start/End: Complemental strand, 29467489 - 29467428
Alignment:
Q  61 caagagattctgaggagtttgtaatcgctggttaatggatcaaaaccgaatccgtgaacgcaa 123  Q
    |||||||||||||| |||||||||||   ||||||||||||||||||||| ||||||||||||    
T  29467489 caagagattctgag-agtttgtaatcatcggttaatggatcaaaaccgaagccgtgaacgcaa 29467428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 29442926 - 29442867
Alignment:
Q  168 aggaataggaatagggagaaaagggataatccgatgtttacagatgttagggttccagaa 227  Q
    |||| ||||||||||  |||| ||||||||||| ||||||| ||||||||||||||||||    
T  29442926 aggagtaggaataggaggaaaggggataatccggtgtttacggatgttagggttccagaa 29442867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 29452918 - 29452859
Alignment:
Q  168 aggaataggaatagggagaaaagggataatccgatgtttacagatgttagggttccagaa 227  Q
    |||||||| ||||||||||  ||| ||| || ||||||||| ||||||||||||||||||    
T  29452918 aggaatagaaatagggagattaggaatattctgatgtttacggatgttagggttccagaa 29452859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 29467384 - 29467333
Alignment:
Q  176 gaatagggagaaaagggataatccgatgtttacagatgttagggttccagaa 227  Q
    |||||||||||  ||| |||||||||||||||| ||||||||| ||||||||    
T  29467384 gaatagggagattaggaataatccgatgtttacggatgttaggattccagaa 29467333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 123
Target Start/End: Original strand, 29423702 - 29423760
Alignment:
Q  65 agattctgaggagtttgtaatcgctggttaatggatcaaaaccgaatccgtgaacgcaa 123  Q
    ||||| ||||||||||||||||    |||||||||||||||||||| |||| |||||||    
T  29423702 agattgtgaggagtttgtaatcatcagttaatggatcaaaaccgaagccgtaaacgcaa 29423760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 29463559 - 29463510
Alignment:
Q  168 aggaataggaatagggagaaaagggataatccgatgtttacagatgttag 217  Q
    |||| ||||||||||| || |||||||||||| |||||||| ||||||||    
T  29463559 aggagtaggaatagggggataagggataatccaatgtttacggatgttag 29463510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 122
Target Start/End: Original strand, 26575304 - 26575364
Alignment:
Q  62 aagagattctgaggagtttgtaatcgctggttaatggatcaaaaccgaatccgtgaacgca 122  Q
    ||||||||||||||||||||||||||| || ||| | |||||||||||| |||||||||||    
T  26575304 aagagattctgaggagtttgtaatcgccggataaagaatcaaaaccgaagccgtgaacgca 26575364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 26575411 - 26575472
Alignment:
Q  175 ggaatagggagaaaagggataatccgatgtttacagatgttagggttccagaatgtgatttc 236  Q
    |||| ||||||||||||||||||||||| ||||| | ||| ||||||||||| || ||||||    
T  26575411 ggaagagggagaaaagggataatccgatatttaccggtgtaagggttccagattgcgatttc 26575472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University