View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13627_low_1 (Length: 397)
Name: NF13627_low_1
Description: NF13627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13627_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 85 - 332
Target Start/End: Complemental strand, 39891334 - 39891087
Alignment:
| Q |
85 |
ccgcggacggcggagctggttgttcggcggcgacggagttgttgaggaggagcggtggaggaagaaagagagaaaagatttggggaatttattattataa |
184 |
Q |
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| T |
39891334 |
ccgcggacggcggagatggttgttcggcggcgacggagttgttgaggaggagcggtggaggaagaaagagagaaaagatttggggaatttattattataa |
39891235 |
T |
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| Q |
185 |
ggaaataaagaatgagattgagatgttcgaaagagaaagaccaatctatcgcgcgacaagttgaattggaattgcaaatgttttacggccataaatggaa |
284 |
Q |
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| T |
39891234 |
ggaaataaagaatgagattgagatgttcgaaagagaaagaccaatctatcgcgcgacaagttgaattggaattgcaaatgttttacggccataaatggaa |
39891135 |
T |
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| Q |
285 |
aatgggtcaaggggaaataattaaaaggctattattttcccttaaaaa |
332 |
Q |
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| T |
39891134 |
aatgggtcaaggggaaataattaaaaggctattattttcccttaaaaa |
39891087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 39891409 - 39891352
Alignment:
| Q |
1 |
cttggatgcagcgccggggcggcgagtggattttccgaatttctgcgccatgtcgacg |
58 |
Q |
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| T |
39891409 |
cttggatgcagcgccggggcggcgagtggattttccgaatttctgcgccatgtcgacg |
39891352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 364
Target Start/End: Complemental strand, 39891055 - 39891022
Alignment:
| Q |
331 |
aatgttgtaaaggattttgaaaattattagttat |
364 |
Q |
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| T |
39891055 |
aatgtagtaaaggattttgaaaattattagttat |
39891022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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