View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13627_low_3 (Length: 320)
Name: NF13627_low_3
Description: NF13627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13627_low_3 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 6914205 - 6913895
Alignment:
| Q |
1 |
ttcaatcagcaagcaaattttgttttctttttaagttttggctggtttagttggggtctaacttaacatactgttattggagtctaagatcaaattaata |
100 |
Q |
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| T |
6914205 |
ttcaatcagcaagcaaattttgttttctttttaagttttggctggtttagttggggtctaacttaacatactgttattggagtctaagatcaaattaata |
6914106 |
T |
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| Q |
101 |
atagccatgacaagaaatttggactactttacattttattaatatcatgtaatctaaaaattaatccttagatttaccctgcaataggtcatttaattga |
200 |
Q |
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| T |
6914105 |
atagccatgacaagaaatttggactactttacattttattattatcatgtaatctaaaaactaatccttaga-ttactctgcaataggtcatttaattga |
6914007 |
T |
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| Q |
201 |
---------ttaaattgaattaaattttctagacataatgatgctattgtagcttaatatccgttcataattgctatatcaagttttcttacatttgttc |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
6914006 |
tttattcctttaaattgaattaaattttctagacataatgatgctattgtagcttaatatccgttcataattgctatatcaagtttccttacatttgttc |
6913907 |
T |
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| Q |
292 |
ccatgtataatc |
303 |
Q |
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| T |
6913906 |
ccatgtataatc |
6913895 |
T |
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Target: scaffold0024 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 202
Target Start/End: Original strand, 155412 - 155498
Alignment:
| Q |
116 |
aatttggactactttacattttattaatatcatgtaatctaaaaattaatccttagatttaccctgcaataggtcatttaattgatt |
202 |
Q |
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| T |
155412 |
aattgggactacttaccctttttttaatatcatgtaatactaaaatcaatccttagatttactttgcaattggccatttaattgatt |
155498 |
T |
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