View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13627_low_5 (Length: 247)
Name: NF13627_low_5
Description: NF13627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13627_low_5 |
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| [»] chr3 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 17 - 247
Target Start/End: Complemental strand, 9168366 - 9168136
Alignment:
| Q |
17 |
cagtcattacgagtacaagggggatccatacgcattccatgattattctaggccggagcatgtagtatacttgaactgtaacaagcaactgaagaacgat |
116 |
Q |
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| T |
9168366 |
cagtcattacgagtacaagggggatccatacgcattccatgattattctaggccggagcatgtagtatacttgaactgtagcaagcaactgaagaacgat |
9168267 |
T |
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| Q |
117 |
cctatgtatttggatacatctacgtgtagactgaactccgaaaataacagctatatttatgcaattgctggggactttagagttgttaaattgaatgttg |
216 |
Q |
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| T |
9168266 |
cctatgtatgtggatacatctacgtgtagactgaactccgaaaataacagctatatttatgcaattgctggggactttagagttgttaaattgaatgttg |
9168167 |
T |
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| Q |
217 |
gttgccgcgtgaagcttgttactatgtcatc |
247 |
Q |
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| T |
9168166 |
gttgccgcgtgaagcttgttactatgtcatc |
9168136 |
T |
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Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 72 - 247
Target Start/End: Original strand, 9307086 - 9307261
Alignment:
| Q |
72 |
gagcatgtagtatacttgaactgtaacaagcaactgaagaacgatcctatgtatttggatacatctacgtgtagactgaactccgaaaataacagctata |
171 |
Q |
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| T |
9307086 |
gagcacgtaatatacttgaactgtagcaatcaagtgaagaacgatcctctgtacgtggatacatctccgtgtagaatcaactctgcaaataacagctatg |
9307185 |
T |
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| Q |
172 |
tttatgcaattgctggggactttagagttgttaaattgaatgttggttgccgcgtgaagcttgttactatgtcatc |
247 |
Q |
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| T |
9307186 |
tttatgcaattgatagggactttagtgttggtgaattaaatgttggttgccgtgtgaagattgttactatatcatc |
9307261 |
T |
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