View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13628_high_15 (Length: 244)
Name: NF13628_high_15
Description: NF13628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13628_high_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 38341879 - 38342086
Alignment:
| Q |
19 |
acagggttaggattaaaaatttcaccttttccataatgtgaacattagtattatagcagaaatgaaaaaggtagcaatttgagaacaaattaatagtggg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
38341879 |
acagggttaggattaaaaatttcaccttttccataatgtgaacattagtattatagcagaaatgaaaaaggtagcaatttgagaccaaattaatagtggg |
38341978 |
T |
|
| Q |
119 |
tttgagtttgactaataatcaccctaatcatgatcccaggaaaaattaaaattgggtttcatgtaaaaatgctgcaatttcagaatgatgaataagcata |
218 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38341979 |
tttgagtt---ctaattatcaccctaatcatgatcccaggaaaaattaaaattgggtttcatgtaaaaatgctgcaatttcagaatgatgaataagcata |
38342075 |
T |
|
| Q |
219 |
aaggtatgtat |
229 |
Q |
| |
|
||||||||||| |
|
|
| T |
38342076 |
aaggtatgtat |
38342086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University