View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13628_high_17 (Length: 237)
Name: NF13628_high_17
Description: NF13628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13628_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 144; Significance: 7e-76; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 15808021 - 15807815
Alignment:
| Q |
17 |
acttgttccttaaaattcatgggaatggttaacggaaacaattaaca----------at-----acacaacatgacttgtactacaaggtttctaagctt |
101 |
Q |
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| T |
15808021 |
acttgttccttaaaattcatgggaatggttaaaggaaacaattaacagccttgaaaaattcacaacacaacatgacttgtactacaaggtttctaagctt |
15807922 |
T |
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| Q |
102 |
cattctccttcatcacttcctcttcatgacgctaacgaatgcgcaatcaccattttacatgtacagttattgccagaattctactgaaaaaacagtcaac |
201 |
Q |
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| T |
15807921 |
cattctacttcatcacttcctcttcatgacgctaacgaatgcgcaatcaccattttacatgtacagttattgccagaattctactgaaaaaacagtcaac |
15807822 |
T |
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| Q |
202 |
acttcat |
208 |
Q |
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||||||| |
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| T |
15807821 |
acttcat |
15807815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 66 - 208
Target Start/End: Complemental strand, 15802338 - 15802196
Alignment:
| Q |
66 |
acacaacatgacttgtactacaaggtttctaagcttcattctccttcatcacttcctcttcatgacgctaacgaatgcgcaatcaccattttacatgtac |
165 |
Q |
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| T |
15802338 |
acacaacatgacttgtactacaaggtttctaagcttcattttccttcatttcttcctcttcatgatcctaacaactgcacaatcaccattttacttgtac |
15802239 |
T |
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| Q |
166 |
agttattgccagaattctactgaaaaaacagtcaacacttcat |
208 |
Q |
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| T |
15802238 |
agtatttgcgagaattcaacagaaaaaacacttaacacttcat |
15802196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 66 - 206
Target Start/End: Complemental strand, 15794539 - 15794399
Alignment:
| Q |
66 |
acacaacatgacttgtactacaaggtttctaagcttcattctccttcatcacttcctcttcatgacgctaacgaatgcgcaatcaccattttacatgtac |
165 |
Q |
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| T |
15794539 |
acacaacatgacttatactacaaggtttctaagcttcattctccttaatctcctcctcttcatgatcctaacaactgcacaatcaccattttatatgtat |
15794440 |
T |
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| Q |
166 |
agttattgccagaattctactgaaaaaacagtcaacacttc |
206 |
Q |
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| T |
15794439 |
agtgtttgcgagaattcaactcaaaaaatactcaacgcttc |
15794399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 208
Target Start/End: Complemental strand, 15815823 - 15815688
Alignment:
| Q |
70 |
aacatgacttgtactacaaggtttctaagcttcattctccttcatcacttcctcttcatgacgctaacgaatgcgcaatcaccattttacatgtacagtt |
169 |
Q |
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||||||||||||||| |||||||||||||||||||||| |||||| || |||||| || |||| ||||| |||||||||| ||||| || | || |
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| T |
15815823 |
aacatgacttgtactgcaaggtttctaagcttcattctacttcatatttttctcttc---accttaacaaatgcacaatcaccatattacaggttaaatt |
15815727 |
T |
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| Q |
170 |
attgccagaattctactgaaaaaacagtcaacacttcat |
208 |
Q |
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|||||||||||| || ||||||||| |||||| |||| |
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| T |
15815726 |
tttgccagaattcaacagaaaaaacaaacaacacatcat |
15815688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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