View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13628_high_5 (Length: 478)
Name: NF13628_high_5
Description: NF13628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13628_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 9 - 459
Target Start/End: Original strand, 43020230 - 43020677
Alignment:
| Q |
9 |
aagaatatcttttagtttttatgggtccatcattcactgaccaaagggcacaaacgacacacactatcttttctgttttgaattttaacttcttatcaat |
108 |
Q |
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| T |
43020230 |
aagaatatcttttagtttttatgggtccatcattcactgaccatagggcacaaacgacacacactatcttttctgttttgaattttaacttcttatcaat |
43020329 |
T |
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| Q |
109 |
gtttgaaggcatctacgtgtagagggagctgatttcaaattttcctatccgaatattttcagtaatctttaattttgaatacaacatgtataaatttaca |
208 |
Q |
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| T |
43020330 |
gtttgaaggcatctacgtgtagagggagttgatttcaaattttcctatccgaatattttcagtaatctttaattttgaatacaacatgtataaatttaca |
43020429 |
T |
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| Q |
209 |
tatgcaaggttcttttaattttcttaatttgtttttcagaaaagagaagagagtggtactaactaggagacagacacatctttatttgctttattcttca |
308 |
Q |
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| T |
43020430 |
tatgcaaggttcttttaattttcttaatttgtttttcagaaaagagaagagagtggtactaactaggagacagacacatctttatttgctttattcttca |
43020529 |
T |
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| Q |
309 |
ttagattcgaacttttaatttcctgctgtattattagatattattgtatagtatttttgacggacatgtaacatgttattaatgctttatttttctctca |
408 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43020530 |
ttagattcgaacttttaatttcctgctgtattattag---ctattgtatagtatttttgacggacatgtaacatgttattaatgctttatttttctctca |
43020626 |
T |
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| Q |
409 |
aaggacatgcatgcaataaagcaaaaaatcaagataaacgggggagggggt |
459 |
Q |
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| T |
43020627 |
aaggacatgcatgcaataaagcaaaaaatcaagataaacgggggagggggt |
43020677 |
T |
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