View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13628_low_1 (Length: 998)
Name: NF13628_low_1
Description: NF13628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13628_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 966; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 966; E-Value: 0
Query Start/End: Original strand, 13 - 982
Target Start/End: Complemental strand, 23853078 - 23852109
Alignment:
| Q |
13 |
tcatcatttggttgcatggaacaagagaggaaagctcttcttgaaatcaaaggaagctttaatgatccattatttagactttcctcttggaaaggaaatg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23853078 |
tcatcatttggttgcatggaacaagagaggaaagctcttcttgaaatcaaaggaagctttaatgatccattatttagactttcctcttggaaaggaaatg |
23852979 |
T |
|
| Q |
113 |
actgttgtaaatggaaaggtataagttgcagcaacatcacaggacatgttgtaaaaattgaccttaggaatccatgttacccacaaaaaggagaacaatt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23852978 |
actgttgtaaatggaaaggtataagttgcagcaacatcacaggacatgttgtaaaaattgaccttaggaatccatgttacccacaaaaaggagaacaatt |
23852879 |
T |
|
| Q |
213 |
tgattcaaactgtccctactcaaaatctaagcttgaagctcagtatatccatcctgctcattcacagttcaagtatcttagttatttggaccttagtgga |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23852878 |
tgattcaaactgtccctactcaaaatctaagcttgaagctcagtatatccatcctgctcattcacagttcaagtatcttagttatttggaccttagtgga |
23852779 |
T |
|
| Q |
313 |
aacaatttcaattcaagtccaataccaaagtttatccattctatgaatcagttacaatttctttctctctatgactcccatttgagtggtaagatcccaa |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23852778 |
aacaatttcaattcaagtccaataccaaagtttatccattctatgaatcagttacaatttctttctctctatgactcccatttgagtggtaagatcccaa |
23852679 |
T |
|
| Q |
413 |
ataaccttggaaacctcacaaaattgtcctttcttgatctcagtttcaatacttatttacactctgatgatgtcagttgggtttcaaaactttcattgct |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23852678 |
ataaccttggaaacctcacaaaattgtcctttcttgatctcagtttcaatacttatttacactctgatgatgtcagttgggtttcaaaactttcattgct |
23852579 |
T |
|
| Q |
513 |
ccaaaacctttacctgagtgatgtttttcttgggagggcacaaaatttgttcttcgtacttaacatgattccttctttgttagaattagacttgatgaac |
612 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23852578 |
ccaaaacctttacctgagtgatgtttttcttgggagggcacaaaatttgttcttcgtacttaacatgattccttctttgttagaattagacttgatgaac |
23852479 |
T |
|
| Q |
613 |
tgcagcataaccaagatgcacagtagtgatcataaactagttagttacacaaacttttctagtattaagacactcaatcttgcagataatggacttgatg |
712 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23852478 |
tgcagcataaccaagatgcacagtagtgatcataaactagttagttacacaaacttttctagtattaagacactcaatcttgcagataatggacttgatg |
23852379 |
T |
|
| Q |
713 |
gtccagatctgaatgtttttagaaacatgacttccgttgaagttattgtcctttctaacaatagtcttagttcagttccattttggttgagtaattgtgc |
812 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23852378 |
gtccagatctgaatgtttttagaaacatgacttccgttaaagttattgtcctttctaacaatagtcttagttcagttccattttggttgagtaattgtgc |
23852279 |
T |
|
| Q |
813 |
caaacttcaacatctttatcttcgaagaaatgctcttaatggctcacttccattagctcttcgaaatttgacttctttggaattgcttaacctttctcaa |
912 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23852278 |
caaacttcaacatctttatcttcgaagaaatgctcttaatggctcacttccattagctcttcgaaatttgacttctttggaattgcttaacctttctcaa |
23852179 |
T |
|
| Q |
913 |
aacaaaattgaatctgttccacagtggttaggagggttaaagagccttttgtatctcaatctgtcatgga |
982 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23852178 |
aacaaaattgaatctgttccacagtggttaggagggttaaagagccttttgtatctcaatctgtcatgga |
23852109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 13 - 982
Target Start/End: Complemental strand, 23752377 - 23751408
Alignment:
| Q |
13 |
tcatcatttggttgcatggaacaagagaggaaagctcttcttgaaatcaaaggaagctttaatgatccattatttagactttcctcttggaaaggaaatg |
112 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||| ||||||||| |||||||||||||||||||| ||| ||| ||||||||||||||| ||||||||| |
|
|
| T |
23752377 |
tcatcatttggttgcatagaacaagagaggcaagcacttcttgaactcaaaggaagctttaatgatacatcattaagactttcctcttgggaaggaaatg |
23752278 |
T |
|
| Q |
113 |
actgttgtaaatggaaaggtataagttgcagcaacatcacaggacatgttgtaaaaattgaccttaggaatccatgttacccacaaaaaggagaacaatt |
212 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||| |||||||||| | || || ||| |
|
|
| T |
23752277 |
aatgttgtaaatggaaaggtataagttgcagcaacattacaggtcatgttgttaaaattgaccttaggaatccatgctacccacaaagaagaaaaaaata |
23752178 |
T |
|
| Q |
213 |
tgattcaaactgtccctactcaaaatctaagcttgaagctcagtatatccatcctgctcattcacagttcaagtatcttagttatttggaccttagtgga |
312 |
Q |
| |
|
| | ||||||||| | | ||||| ||||||| |||||| | |||||| | ||| |||| | || || |||||||| |||| |||||||||||| |
|
|
| T |
23752177 |
tcaatcaaactgttcattaacaaaaaataagcttaaagctccagaaatccatacatctctttcaaattttaaaaatcttagtaatttagaccttagtgga |
23752078 |
T |
|
| Q |
313 |
aacaatttcaattcaagtccaataccaaagtttatccattctatgaatcagttacaatttctttctctctatgactcccatttgagtggtaagatcccaa |
412 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||| |||||||||||| |||| |||||| ||| ||| ||| |||||||||| | ||||||| |
|
|
| T |
23752077 |
aacaatttaaattcaagtccaataccaacatttatccatttaatgaatcagttaaaattcctttctatctctgattccaatttgagtggaataatcccaa |
23751978 |
T |
|
| Q |
413 |
ataaccttggaaacctcacaaaattgtcctttcttgatctcagtttcaatacttatttacactctgatgatgtcagttgggtttcaaaactttcattgct |
512 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
23751977 |
ataaccttagaaacctcacaaaattgaactttcttgatctcagtttaaattcttatttacactctgatgatgtaaattgggtttcaaaactttcattgct |
23751878 |
T |
|
| Q |
513 |
ccaaaacctttacctgagtgatgtttttcttgggagggcacaaaatttgttcttcgtacttaacatgattccttctttgttagaattagacttgatgaac |
612 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |||||||||||| ||| ||||||| |||| ||||||||||| |||||||||| |||| |||| |
|
|
| T |
23751877 |
ccaaaacctttaaatgagtgatgtttttcttgggaaggcacaaaatttattcaaggtacttaccatgcttccttctttgatagaattagaattgaagaac |
23751778 |
T |
|
| Q |
613 |
tgcagcataaccaagatgcacagtagtgatcataaactagttagttacacaaacttttctagtattaagacactcaatcttgcagataatggacttgatg |
712 |
Q |
| |
|
|| ||||||||||||||||||||| |||||| |||| |||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
23751777 |
tgaagcataaccaagatgcacagtcatgatcaacaacttgttagttacacaaatttttctagtattaaatcactcaatcttgcagataatagacttgatg |
23751678 |
T |
|
| Q |
713 |
gtccagatctgaatgtttttagaaacatgacttccgttgaagttattgtcctttctaacaatagtcttagttcagttccattttggttgagtaattgtgc |
812 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||||| |||| |||||||||||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
23751677 |
gtccagatctgaatgcttttagaaacatgacttcaattgaaaatattaacctttctaacaatagtattagttcagttccaatttggttgagtaattgtgc |
23751578 |
T |
|
| Q |
813 |
caaacttcaacatctttatcttcgaagaaatgctcttaatggctcacttccattagctcttcgaaatttgacttctttggaattgcttaacctttctcaa |
912 |
Q |
| |
|
||||||| | ||||||||||| |||| ||||||||||| || ||| |||||| ||||||| ||||||||||||| ||| ||| ||| ||||||| ||| |
|
|
| T |
23751577 |
caaacttgactatctttatcttggaagcaatgctcttaaaggttcagttccataagctcttagaaatttgacttccttgaaatagctagacctttcccaa |
23751478 |
T |
|
| Q |
913 |
aacaaaattgaatctgttccacagtggttaggagggttaaagagccttttgtatctcaatctgtcatgga |
982 |
Q |
| |
|
||||||||||||||||||||| | ||||||| |||||| |||| |||||||| |||||| | ||||||| |
|
|
| T |
23751477 |
aacaaaattgaatctgttccaaaatggttagatgggttagagagtcttttgtacctcaatatttcatgga |
23751408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 13 - 982
Target Start/End: Complemental strand, 22619770 - 22618801
Alignment:
| Q |
13 |
tcatcatttggttgcatggaacaagagaggaaagctcttcttgaaatcaaaggaagctttaatgatccattatttagactttcctcttggaaaggaaatg |
112 |
Q |
| |
|
||||||||||||||| | |||||||||||| |||||||| | | | |||||||||||||||||||| ||| ||| ||||||||||||||| ||||||||| |
|
|
| T |
22619770 |
tcatcatttggttgcttagaacaagagaggcaagctcttttagcactcaaaggaagctttaatgatacatcattaagactttcctcttgggaaggaaatg |
22619671 |
T |
|
| Q |
113 |
actgttgtaaatggaaaggtataagttgcagcaacatcacaggacatgttgtaaaaattgaccttaggaatccatgttacccacaaaaaggagaacaatt |
212 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||| |||||||||| | || || ||| |
|
|
| T |
22619670 |
aatgttgtaaatggaaaggtataagttgcagcaacattacaggtcatgttataaaaattgaccttaggaatccatgctacccacaaagaagaaaaaaata |
22619571 |
T |
|
| Q |
213 |
tgattcaaactgtccctactcaaaatctaagcttgaagctcagtatatccatcctgctcattcacagttcaagtatcttagttatttggaccttagtgga |
312 |
Q |
| |
|
| | ||||||||| | | ||||| ||||||| |||||| | |||||| | ||| |||| | || || |||||||| |||| |||||||||||| |
|
|
| T |
22619570 |
tcaatcaaactgttcattaacaaaaaataagcttaaagctccagaaatccatacatctctttcaaattttaaaaatcttagtaatttagaccttagtgga |
22619471 |
T |
|
| Q |
313 |
aacaatttcaattcaagtccaataccaaagtttatccattctatgaatcagttacaatttctttctctctatgactcccatttgagtggtaagatcccaa |
412 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||| |||||||||||| |||| |||||| ||| ||| ||| |||||||||| | ||||||| |
|
|
| T |
22619470 |
aacaatttaaattcaagtccaataccaacatttatccatttaatgaatcagttaaaattcctttctatctctgattccaatttgagtggaataatcccaa |
22619371 |
T |
|
| Q |
413 |
ataaccttggaaacctcacaaaattgtcctttcttgatctcagtttcaatacttatttacactctgatgatgtcagttgggtttcaaaactttcattgct |
512 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
22619370 |
ataaccttagaaacctcacaaaattgaactttcttgatctcagtttaaattcttatttacactctgatgatgtaaattgggtttcaaaactttcattgct |
22619271 |
T |
|
| Q |
513 |
ccaaaacctttacctgagtgatgtttttcttgggagggcacaaaatttgttcttcgtacttaacatgattccttctttgttagaattagacttgatgaac |
612 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |||||||||||| ||| ||||||| |||| ||||||||||| |||||||||| |||| |||| |
|
|
| T |
22619270 |
ccaaaacctttacttgagtgatgtttttcttgggaaggcacaaaatttattcaaggtacttaccatgcttccttctttgatagaattagaattgaagaac |
22619171 |
T |
|
| Q |
613 |
tgcagcataaccaagatgcacagtagtgatcataaactagttagttacacaaacttttctagtattaagacactcaatcttgcagataatggacttgatg |
712 |
Q |
| |
|
|| ||||||||||||||||||||| |||||| |||| |||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
22619170 |
tgaagcataaccaagatgcacagtcatgatcaacaacttgttagttacacaaatttttctagtattaaatcactcaatcttgcagataatagacttgatg |
22619071 |
T |
|
| Q |
713 |
gtccagatctgaatgtttttagaaacatgacttccgttgaagttattgtcctttctaacaatagtcttagttcagttccattttggttgagtaattgtgc |
812 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||||| |||| |||||||||||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
22619070 |
gtccagatctgaatgcttttagaaacatgacttcaattgaaaatattaacctttctaacaatagtattagttcagttccaatttggttgagtaattgtgc |
22618971 |
T |
|
| Q |
813 |
caaacttcaacatctttatcttcgaagaaatgctcttaatggctcacttccattagctcttcgaaatttgacttctttggaattgcttaacctttctcaa |
912 |
Q |
| |
|
||||||| | ||||||||||| |||| ||||||||||| || ||| |||||| ||||||| ||||||||||||| ||| ||| ||| ||||||| ||| |
|
|
| T |
22618970 |
caaacttgactatctttatcttggaagcaatgctcttaaaggttcagttccataagctcttagaaatttgacttccttgaaatagctagacctttcccaa |
22618871 |
T |
|
| Q |
913 |
aacaaaattgaatctgttccacagtggttaggagggttaaagagccttttgtatctcaatctgtcatgga |
982 |
Q |
| |
|
||||||||||||||||||||| | ||||||| |||||| |||| |||||||| |||||| | ||||||| |
|
|
| T |
22618870 |
aacaaaattgaatctgttccaaaatggttagatgggttagagagtcttttgtacctcaatatttcatgga |
22618801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 655 - 982
Target Start/End: Original strand, 20573044 - 20573371
Alignment:
| Q |
655 |
agttacacaaacttttctagtattaagacactcaatcttgcagataatggacttgatggtccagatctgaatgtttttagaaacatgacttccgttgaag |
754 |
Q |
| |
|
||||||||||| |||||||| |||||| |||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||| ||||| |
|
|
| T |
20573044 |
agttacacaaatttttctagcattaagtcactcaatcttgcagataatggacttaatggtccaaatctgaatgcttttagaaacatgacttcaattgaaa |
20573143 |
T |
|
| Q |
755 |
ttattgtcctttctaacaatagtcttagttcagttccattttggttgagtaattgtgccaaacttcaacatctttatcttcgaagaaatgctcttaatgg |
854 |
Q |
| |
|
||||| ||||||||||||||| | |||||||||||||||||||| |||||||||| ||||| |||||| ||| |||| |||||||| ||||| |
|
|
| T |
20573144 |
ctattgacctttctaacaatagaatcagttcagttccattttggttaggtaattgtgcaaaactgggttatctttctctcggaagcaatgctctcaatgg |
20573243 |
T |
|
| Q |
855 |
ctcacttccattagctcttcgaaatttgacttctttggaattgcttaacctttctcaaaacaaaattgaatctgttccacagtggttaggagggttaaag |
954 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| |||||| ||||||| |||||||| ||||||||||||||| |||||||| ||||||||| |
|
|
| T |
20573244 |
ctcacttccattagctcttcgaaatttgacttccttgacgttgcttgacctttcccaaaacaacattgaatctgttccattatggttaggtgggttaaag |
20573343 |
T |
|
| Q |
955 |
agccttttgtatctcaatctgtcatgga |
982 |
Q |
| |
|
|| ||||||| |||||| | ||||||| |
|
|
| T |
20573344 |
agtattttgtacctcaatatttcatgga |
20573371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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