View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13628_low_10 (Length: 324)
Name: NF13628_low_10
Description: NF13628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13628_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 19 - 292
Target Start/End: Complemental strand, 46484042 - 46483769
Alignment:
| Q |
19 |
ggcggtacgactaaagatggtttatcttaacaacctcatgcttttctaaatccgaattgagaacgagttgtacaatttgaacaaagatattcatcaacgc |
118 |
Q |
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|||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46484042 |
ggcggtacgactaaagatggtttatcttgacaaccccatgcttttctaaatccgaattgagaacgagttgtacaatttgaacaaagatattcatcaacgc |
46483943 |
T |
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| Q |
119 |
cataaatatcaaagctattcttccaattctatgattcattataaactttcttaatcttaattcttcgattatcaagagaatgagattctgataatcttaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
46483942 |
cataaatatcaaagctattcttccaattctatgattcattataaactttcttaatcttaattctccgattatcaagagaatgagattctgataatcttaa |
46483843 |
T |
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| Q |
219 |
attggttgaatggtcatataaatttcaatcacatctaatttaattatgaaaatattttatagtttccttaattt |
292 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46483842 |
attggttgaatgatcatataaatttcaatcacatctaatttaattatgaaaatattttatagtttccttaattt |
46483769 |
T |
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