View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13628_low_13 (Length: 278)
Name: NF13628_low_13
Description: NF13628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13628_low_13 |
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| [»] chr7 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 278
Target Start/End: Original strand, 3437273 - 3437533
Alignment:
| Q |
18 |
actttgtctttagatgacagccatcaaccccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaagatccaaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3437273 |
actttgtctttagatgacagccatcaaccccaataaatggcctacatccatttgtaaacccttttttgcatccatcaaaacaaaagtaaaaagatccaaa |
3437372 |
T |
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| Q |
118 |
cctgggttgtaatcctggatctggcctatcaacagtgatactcaccctgtttccaggacacactcttttaagttcagcagcatatctccttatcattgag |
217 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3437373 |
cctgggttgtaatcctggatctggcctatcaacattgatactcacactgtttccaggacacactcttttaagttcagcagcatatctccttatcattgag |
3437472 |
T |
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| Q |
218 |
tattgacaatcagcatcaccctcaacaattttctgagctatctgttttgctttccacgccc |
278 |
Q |
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| T |
3437473 |
tattgacaatcagcatcaccctcaacaattttctgagctatctgttttgctttccacgccc |
3437533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 278
Target Start/End: Complemental strand, 46240206 - 46239946
Alignment:
| Q |
18 |
actttgtctttagatgacagccatcaaccccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaagatccaaa |
117 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
46240206 |
actttgtctttagatgacaaccatcaaccccaataaatggcctacatccatttgtaaacccttttttgcaaccatcaaaacaaaagtaaaaagatccaaa |
46240107 |
T |
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| Q |
118 |
cctgggttgtaatcctggatctggcctatcaacagtgatactcaccctgtttccaggacacactcttttaagttcagcagcatatctccttatcattgag |
217 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46240106 |
cctgggttgtaatcctggatctggcctatcaacattgatactcacactatttccaggacacactcttttaagttcagcagcatatctccttatcattgag |
46240007 |
T |
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| Q |
218 |
tattgacaatcagcatcaccctcaacaattttctgagctatctgttttgctttccacgccc |
278 |
Q |
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| T |
46240006 |
tattgacaatcagcatcaccctcaacaattttctgagctatctgtttagctttccacgccc |
46239946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 278
Target Start/End: Complemental strand, 23541600 - 23541340
Alignment:
| Q |
18 |
actttgtctttagatgacagccatcaaccccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaagatccaaa |
117 |
Q |
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|||||||||||| |||||| ||||| ||||||| |||||| ||||| ||||| | || ||||| || |||||||||||||||||||| ||||| ||||| |
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| T |
23541600 |
actttgtctttaaatgacatccatctaccccaacaaatggtctacacccattgatgaaacctttcttacagccatcaaaacaaaagtagaaagaaccaaa |
23541501 |
T |
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| Q |
118 |
cctgggttgtaatcctggatctggcctatcaacagtgatactcaccctgtttccaggacacactcttttaagttcagcagcatatctccttatcattgag |
217 |
Q |
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||||||||| | | ||| ||| ||||| ||| | || |||| | ||||||| | ||| ||||||||||| |||||||| |||| ||||| | |
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| T |
23541500 |
cctgggttggattgatggggttggtctatccacatttatcttcacattatttccagcattcacccttttaagttctgcagcatacctccaaatcatggca |
23541401 |
T |
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| Q |
218 |
tattgacaatcagcatcaccctcaacaattttctgagctatctgttttgctttccacgccc |
278 |
Q |
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||||| | |||||||||||| |||||||| ||||||| ||||||||||| ||||| |||| |
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| T |
23541400 |
tattgcctatcagcatcaccatcaacaatactctgagcaatctgttttgccttccaagccc |
23541340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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