View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13628_low_18 (Length: 238)

Name: NF13628_low_18
Description: NF13628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13628_low_18
NF13628_low_18
[»] chr1 (2 HSPs)
chr1 (1-223)||(46483421-46483643)
chr1 (165-214)||(42132971-42133020)
[»] chr6 (1 HSPs)
chr6 (165-223)||(30665568-30665626)
[»] chr3 (1 HSPs)
chr3 (160-214)||(29183489-29183543)
[»] chr7 (2 HSPs)
chr7 (176-223)||(35376567-35376611)
chr7 (165-205)||(40236372-40236412)


Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 46483643 - 46483421
Alignment:
Q  1 ttttgtctcccctttcacatatcacggttctaggatggttacacttgctttcattcaatttttgtatcatcaacttgtaaagatcaagtgacaaattgaa 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  46483643 ttttgtctcccctttcacatatcacggttctaggatggtgacacttgctttcattcaatttttgtatcatcaactcgtaaagatcaagtgacaaattgaa 46483544  T
Q  101 caatgctcacaacaaaacattgatcaggatgagacattttcatcgtgttagttacaatagtatctgtaatgatcttaaatagagaatgccatgtcatcaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46483543 caatgctcacaacaaaacattgatcaggatgagacattttcatcgtgttagttacaatagtatctgtaatgatcttaaatagagaatgccatgtcatcaa 46483444  T
Q  201 atgaagctagcaaactgtcattg 223  Q
    |||||||||||||||||||||||    
T  46483443 atgaagctagcaaactgtcattg 46483421  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 42133020 - 42132971
Alignment:
Q  165 tgtaatgatcttaaatagagaatgccatgtcatcaaatgaagctagcaaa 214  Q
    |||||||||| |||||||| ||  ||||||||| ||||||||||||||||    
T  42133020 tgtaatgatcctaaatagaaaaaaccatgtcatgaaatgaagctagcaaa 42132971  T

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Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 165 - 223
Target Start/End: Complemental strand, 30665626 - 30665568
Alignment:
Q  165 tgtaatgatcttaaatagagaatgccatgtcatcaaatgaagctagcaaactgtcattg 223  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30665626 tgtaatgatattaaatagagaatgccatgtcatcaaatgaagctagcaaactgtcattg 30665568  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 160 - 214
Target Start/End: Original strand, 29183489 - 29183543
Alignment:
Q  160 gtatctgtaatgatcttaaatagagaatgccatgtcatcaaatgaagctagcaaa 214  Q
    |||| |||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  29183489 gtatatgtaatgatcctaaatagagaaagccatgtcatcaaatgaagctagcaaa 29183543  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 223
Target Start/End: Complemental strand, 35376611 - 35376567
Alignment:
Q  176 taaatagagaatgccatgtcatcaaatgaagctagcaaactgtcattg 223  Q
    |||||||||||||||||||||||||||   ||||||||||||||||||    
T  35376611 taaatagagaatgccatgtcatcaaat---gctagcaaactgtcattg 35376567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 40236412 - 40236372
Alignment:
Q  165 tgtaatgatcttaaatagagaatgccatgtcatcaaatgaa 205  Q
    |||||||||| ||||||||||| ||||||||||||||||||    
T  40236412 tgtaatgatcctaaatagagaaagccatgtcatcaaatgaa 40236372  T

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