View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13628_low_21 (Length: 227)
Name: NF13628_low_21
Description: NF13628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13628_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 22 - 211
Target Start/End: Original strand, 2078752 - 2078941
Alignment:
| Q |
22 |
cctccttcactcattataatttcaactcattcctcattataattaaggtatcagagtatttagggtttattttccatttttgttggtttatgatttcagc |
121 |
Q |
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| T |
2078752 |
cctccttcactcattataatttcaactcattcctcattataattaaggtatcagggtatttagggtttattttccatttttgttggtttatgatttcagc |
2078851 |
T |
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| Q |
122 |
tcattcatccttattttcctacttttatctctgtttagggtttttagtttgattctgtgtagatatcattttgtaagttagttagatttt |
211 |
Q |
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| T |
2078852 |
tcattcatccttattttcctacttttatctctgtttagggtttttagtttgattctgtgtagatatcattttgtaagttagttagatttt |
2078941 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 38776159 - 38776203
Alignment:
| Q |
167 |
agtttgattctgtgtagatatcattttgtaagttagttagatttt |
211 |
Q |
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| T |
38776159 |
agttagattctgtgcggatatgattttgtaagttagttagatttt |
38776203 |
T |
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