View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13628_low_3 (Length: 615)
Name: NF13628_low_3
Description: NF13628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13628_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 543; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 11 - 600
Target Start/End: Complemental strand, 19769171 - 19768582
Alignment:
| Q |
11 |
acatcatcagtgcgtctagtgtcacttggttacatctgcacaaagcgtacatggtttataacatcacctatagactgaatttacctgaaaaaagacggga |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19769171 |
acatcatcagtgcgtctagtgtcacttggttacatctgcacaaagcgtacatgatttataacatcacctatagactgaatttacctgaaaaaagacggga |
19769072 |
T |
|
| Q |
111 |
acaaccaataggaatcagtcaggacacagtatgatcatgtcatacacaatttgagtaagcatattttgtccctcacttactcgacctgctaaagagcttc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
19769071 |
acaaccaataggaatcagtcaggacacagtatgatcatgtcatacacaatttgagtaagcatattttgtcactcacttactcgacctgctaaagagcttc |
19768972 |
T |
|
| Q |
211 |
aagtagacctgctaatgttatagtttcttctatagcaaaatagatgagaaagaaacaaataaaagtggaagaagaaaatttacccataagaacctttctc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19768971 |
aagtagacctgctaatgttatagtttcttctatagcaaaatagatgagaaagaaacaaataaaagtggaagaagaaaatttacccataagaacctttctc |
19768872 |
T |
|
| Q |
311 |
cgtcagattcaagct-caaacaaaatcagcttctcaaatttctccttctcagtttgcacatgatttaaggttcccctcccctgcctcaaattcattgacg |
409 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
19768871 |
cgtcagattcaagctaaaaaaaaaatcagcttctcaaatttctccttctcagtttgcacatgatttaaggttcctct-ccctgcctcaaattcattgacg |
19768773 |
T |
|
| Q |
410 |
gataggttccccaacgataatggctaaacaacatgcaccattttcttccaataacctgccaagaataaaaaatgcagatagttttagaggcatgagtaca |
509 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
19768772 |
gataggttccacaacgataatggctaaacaacatgcaccattttcttccaataacctgccaagaataaaaaatgcagatagttttagaggcatcagtaca |
19768673 |
T |
|
| Q |
510 |
tgagttaattgatataacttaattttaacatgttagaaactgaaatctgcataatataattgaacataccaatagatatcatggtccttaa |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19768672 |
tgagttaattgatataacttaattttaacatgttagaaactaaaatctgcataatataattgaacataccaatagatatcatggtccttaa |
19768582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 11 - 217
Target Start/End: Original strand, 32014289 - 32014495
Alignment:
| Q |
11 |
acatcatcagtgcgtctagtgtcacttggttacatctgcacaaagcgtacatggtttataacatcacctatagactgaatttacctgaaaaaagacggga |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
32014289 |
acatcatcagtgcgtctagtgtcacttggttacatctgcacaaagcgtacatggcttataacatcacctgtagattgaatttacctgaaaaaagacggga |
32014388 |
T |
|
| Q |
111 |
acaaccaataggaatcagtcaggacacagtatgatcatgtcatacacaatttgagtaagcatattttgtccctcacttactcgacctgctaaagagcttc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
32014389 |
acaaccaataggaatcagtcaggacacaataagatcatgtcatacacaatttgagtaagcatattttgtcactcacttactcgacctgctaaaaagcttc |
32014488 |
T |
|
| Q |
211 |
aagtaga |
217 |
Q |
| |
|
||||||| |
|
|
| T |
32014489 |
aagtaga |
32014495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 226 - 378
Target Start/End: Complemental strand, 29199302 - 29199150
Alignment:
| Q |
226 |
tgttatagtttcttctatagcaaaatagatgagaaagaaacaaataaaagtggaagaagaaaatttacccataagaacctttctccgtcagattcaagct |
325 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| | |
|
|
| T |
29199302 |
tgttctagtttcttctatagcaaaatagatgagaaagaaacaaataaaagtggaagaagaaactttatccataagaacctttctccgtcagattcaaatt |
29199203 |
T |
|
| Q |
326 |
caaacaaaatcagcttctcaaatttctccttctcagtttgcacatgatttaag |
378 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
29199202 |
caaacaaaatcagcttctcaaatttctccttctcattttgcacatgatttaag |
29199150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 509 - 587
Target Start/End: Complemental strand, 29200212 - 29200134
Alignment:
| Q |
509 |
atgagttaattgatataacttaattttaacatgttagaaactgaaatctgcataatataattgaacataccaatagata |
587 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29200212 |
atgagttaattgatataacttatttttaacatgttagaaactgaaatctgcataatataattgaacataccaatagata |
29200134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 123; Significance: 7e-63; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 474 - 600
Target Start/End: Original strand, 37616579 - 37616705
Alignment:
| Q |
474 |
ataaaaaatgcagatagttttagaggcatgagtacatgagttaattgatataacttaattttaacatgttagaaactgaaatctgcataatataattgaa |
573 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
37616579 |
ataaaaaatgcagatagttttagaggcatgagtacatgagttaattgatataacttaattttaacatgttagaaacttaaatctgcataatataattgaa |
37616678 |
T |
|
| Q |
574 |
cataccaatagatatcatggtccttaa |
600 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
37616679 |
cataccaatagatatcatggtccttaa |
37616705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 521 - 592
Target Start/End: Original strand, 1659810 - 1659881
Alignment:
| Q |
521 |
atataacttaattttaacatgttagaaactgaaatctgcataatataattgaacataccaatagatatcatg |
592 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
1659810 |
atataacttgattttaacatgttagaaactgaaatctacataatataattgaacataccaatagagatcatg |
1659881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 521 - 592
Target Start/End: Original strand, 32226087 - 32226158
Alignment:
| Q |
521 |
atataacttaattttaacatgttagaaactgaaatctgcataatataattgaacataccaatagatatcatg |
592 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
32226087 |
atataacttgattttaacatgttagaaactgaaatctacataatataattgaacataccaatagagatcatg |
32226158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 231 - 285
Target Start/End: Original strand, 25901171 - 25901225
Alignment:
| Q |
231 |
tagtttcttctatagcaaaatagatgagaaagaaacaaataaaagtggaagaaga |
285 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25901171 |
tagtttcttctatggcaaaatagatgagaaagaaacaaataaaagtggaagaaga |
25901225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 343 - 402
Target Start/End: Complemental strand, 5478268 - 5478209
Alignment:
| Q |
343 |
tcaaatttctccttctcagtttgcacatgatttaaggttcccctcccctgcctcaaattc |
402 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||| ||||||| |||||||||| |
|
|
| T |
5478268 |
tcaaatttctccttctcattttgcacatgatttgaggttccactcccctccctcaaattc |
5478209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 304
Target Start/End: Original strand, 50227374 - 50227416
Alignment:
| Q |
262 |
gaaacaaataaaagtggaagaagaaaatttacccataagaacc |
304 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
50227374 |
gaaacaaataaaagtgaaagaagaaactttacccataagaacc |
50227416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 343 - 402
Target Start/End: Original strand, 2685044 - 2685103
Alignment:
| Q |
343 |
tcaaatttctccttctcagtttgcacatgatttaaggttcccctcccctgcctcaaattc |
402 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||| ||||||| |||||||||| |
|
|
| T |
2685044 |
tcaaatttctccttctcattttgcacatgatttgaggttccactcccctccctcaaattc |
2685103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 343 - 402
Target Start/End: Original strand, 45008469 - 45008528
Alignment:
| Q |
343 |
tcaaatttctccttctcagtttgcacatgatttaaggttcccctcccctgcctcaaattc |
402 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||| ||||||| |||||||||| |
|
|
| T |
45008469 |
tcaaatttctccttctcattttgcacatgatttgaggttccactcccctccctcaaattc |
45008528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University