View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13628_low_4 (Length: 535)
Name: NF13628_low_4
Description: NF13628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13628_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 497; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 19 - 519
Target Start/End: Complemental strand, 23852609 - 23852109
Alignment:
| Q |
19 |
atgtcagttgggtttcaaaactttcattgctccaaaacctttacctgagtgatgtttttcttgggagggcacaaaatttgttcttcgtacttaacatgat |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23852609 |
atgtcagttgggtttcaaaactttcattgctccaaaacctttacctgagtgatgtttttcttgggagggcacaaaatttgttcttcgtacttaacatgat |
23852510 |
T |
|
| Q |
119 |
tccttctttgttagaattagacttgatgaactgcagcataaccaagatgcacagtagtgatcataaactagttagttacacaaacttttctagtattaag |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23852509 |
tccttctttgttagaattagacttgatgaactgcagcataaccaagatgcacagtagtgatcataaactagttagttacacaaacttttctagtattaag |
23852410 |
T |
|
| Q |
219 |
acactcaatcttgcagataatggacttgatggtccagatctgaatgtttttagaaacatgacttccgttgaagttattgtcctttctaacaatagtctta |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
23852409 |
acactcaatcttgcagataatggacttgatggtccagatctgaatgtttttagaaacatgacttccgttaaagttattgtcctttctaacaatagtctta |
23852310 |
T |
|
| Q |
319 |
gttcagttccattttggttgagtaattgtgccaaacttcaacatctttatcttcgaagaaatgctcttaatggctcacttccattagctcttcgaaattt |
418 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23852309 |
gttcagttccattttggttgagtaattgtgccaaacttcaacatctttatcttcgaagaaatgctcttaatggctcacttccattagctcttcgaaattt |
23852210 |
T |
|
| Q |
419 |
gacttctttggaattgcttaacctttctcaaaacaaaattgaatctgttccacagtggttaggagggttaaagagccttttgtatctcaatctgtcatgg |
518 |
Q |
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| T |
23852209 |
gacttctttggaattgcttaacctttctcaaaacaaaattgaatctgttccacagtggttaggagggttaaagagccttttgtatctcaatctgtcatgg |
23852110 |
T |
|
| Q |
519 |
a |
519 |
Q |
| |
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| |
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| T |
23852109 |
a |
23852109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 26 - 519
Target Start/End: Complemental strand, 22619294 - 22618801
Alignment:
| Q |
26 |
ttgggtttcaaaactttcattgctccaaaacctttacctgagtgatgtttttcttgggagggcacaaaatttgttcttcgtacttaacatgattccttct |
125 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||| ||||||| |||| |||||||| |
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| T |
22619294 |
ttgggtttcaaaactttcattgctccaaaacctttacttgagtgatgtttttcttgggaaggcacaaaatttattcaaggtacttaccatgcttccttct |
22619195 |
T |
|
| Q |
126 |
ttgttagaattagacttgatgaactgcagcataaccaagatgcacagtagtgatcataaactagttagttacacaaacttttctagtattaagacactca |
225 |
Q |
| |
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||| |||||||||| |||| |||||| ||||||||||||||||||||| |||||| |||| |||||||||||||| |||||||||||||| |||||| |
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| T |
22619194 |
ttgatagaattagaattgaagaactgaagcataaccaagatgcacagtcatgatcaacaacttgttagttacacaaatttttctagtattaaatcactca |
22619095 |
T |
|
| Q |
226 |
atcttgcagataatggacttgatggtccagatctgaatgtttttagaaacatgacttccgttgaagttattgtcctttctaacaatagtcttagttcagt |
325 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||| |||| |||||||||||||||| |||||||||| |
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| T |
22619094 |
atcttgcagataatagacttgatggtccagatctgaatgcttttagaaacatgacttcaattgaaaatattaacctttctaacaatagtattagttcagt |
22618995 |
T |
|
| Q |
326 |
tccattttggttgagtaattgtgccaaacttcaacatctttatcttcgaagaaatgctcttaatggctcacttccattagctcttcgaaatttgacttct |
425 |
Q |
| |
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|||| |||||||||||||||||||||||||| | ||||||||||| |||| ||||||||||| || ||| |||||| ||||||| ||||||||||||| |
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| T |
22618994 |
tccaatttggttgagtaattgtgccaaacttgactatctttatcttggaagcaatgctcttaaaggttcagttccataagctcttagaaatttgacttcc |
22618895 |
T |
|
| Q |
426 |
ttggaattgcttaacctttctcaaaacaaaattgaatctgttccacagtggttaggagggttaaagagccttttgtatctcaatctgtcatgga |
519 |
Q |
| |
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||| ||| ||| ||||||| |||||||||||||||||||||||| | ||||||| |||||| |||| |||||||| |||||| | ||||||| |
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| T |
22618894 |
ttgaaatagctagacctttcccaaaacaaaattgaatctgttccaaaatggttagatgggttagagagtcttttgtacctcaatatttcatgga |
22618801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 26 - 519
Target Start/End: Complemental strand, 23751901 - 23751408
Alignment:
| Q |
26 |
ttgggtttcaaaactttcattgctccaaaacctttacctgagtgatgtttttcttgggagggcacaaaatttgttcttcgtacttaacatgattccttct |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||| ||||||| |||| |||||||| |
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| T |
23751901 |
ttgggtttcaaaactttcattgctccaaaacctttaaatgagtgatgtttttcttgggaaggcacaaaatttattcaaggtacttaccatgcttccttct |
23751802 |
T |
|
| Q |
126 |
ttgttagaattagacttgatgaactgcagcataaccaagatgcacagtagtgatcataaactagttagttacacaaacttttctagtattaagacactca |
225 |
Q |
| |
|
||| |||||||||| |||| |||||| ||||||||||||||||||||| |||||| |||| |||||||||||||| |||||||||||||| |||||| |
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| T |
23751801 |
ttgatagaattagaattgaagaactgaagcataaccaagatgcacagtcatgatcaacaacttgttagttacacaaatttttctagtattaaatcactca |
23751702 |
T |
|
| Q |
226 |
atcttgcagataatggacttgatggtccagatctgaatgtttttagaaacatgacttccgttgaagttattgtcctttctaacaatagtcttagttcagt |
325 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||| |||| |||||||||||||||| |||||||||| |
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| T |
23751701 |
atcttgcagataatagacttgatggtccagatctgaatgcttttagaaacatgacttcaattgaaaatattaacctttctaacaatagtattagttcagt |
23751602 |
T |
|
| Q |
326 |
tccattttggttgagtaattgtgccaaacttcaacatctttatcttcgaagaaatgctcttaatggctcacttccattagctcttcgaaatttgacttct |
425 |
Q |
| |
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|||| |||||||||||||||||||||||||| | ||||||||||| |||| ||||||||||| || ||| |||||| ||||||| ||||||||||||| |
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|
| T |
23751601 |
tccaatttggttgagtaattgtgccaaacttgactatctttatcttggaagcaatgctcttaaaggttcagttccataagctcttagaaatttgacttcc |
23751502 |
T |
|
| Q |
426 |
ttggaattgcttaacctttctcaaaacaaaattgaatctgttccacagtggttaggagggttaaagagccttttgtatctcaatctgtcatgga |
519 |
Q |
| |
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||| ||| ||| ||||||| |||||||||||||||||||||||| | ||||||| |||||| |||| |||||||| |||||| | ||||||| |
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| T |
23751501 |
ttgaaatagctagacctttcccaaaacaaaattgaatctgttccaaaatggttagatgggttagagagtcttttgtacctcaatatttcatgga |
23751408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 192 - 519
Target Start/End: Original strand, 20573044 - 20573371
Alignment:
| Q |
192 |
agttacacaaacttttctagtattaagacactcaatcttgcagataatggacttgatggtccagatctgaatgtttttagaaacatgacttccgttgaag |
291 |
Q |
| |
|
||||||||||| |||||||| |||||| |||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||| ||||| |
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|
| T |
20573044 |
agttacacaaatttttctagcattaagtcactcaatcttgcagataatggacttaatggtccaaatctgaatgcttttagaaacatgacttcaattgaaa |
20573143 |
T |
|
| Q |
292 |
ttattgtcctttctaacaatagtcttagttcagttccattttggttgagtaattgtgccaaacttcaacatctttatcttcgaagaaatgctcttaatgg |
391 |
Q |
| |
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||||| ||||||||||||||| | |||||||||||||||||||| |||||||||| ||||| |||||| ||| |||| |||||||| ||||| |
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|
| T |
20573144 |
ctattgacctttctaacaatagaatcagttcagttccattttggttaggtaattgtgcaaaactgggttatctttctctcggaagcaatgctctcaatgg |
20573243 |
T |
|
| Q |
392 |
ctcacttccattagctcttcgaaatttgacttctttggaattgcttaacctttctcaaaacaaaattgaatctgttccacagtggttaggagggttaaag |
491 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||| |||||| ||||||| |||||||| ||||||||||||||| |||||||| ||||||||| |
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| T |
20573244 |
ctcacttccattagctcttcgaaatttgacttccttgacgttgcttgacctttcccaaaacaacattgaatctgttccattatggttaggtgggttaaag |
20573343 |
T |
|
| Q |
492 |
agccttttgtatctcaatctgtcatgga |
519 |
Q |
| |
|
|| ||||||| |||||| | ||||||| |
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|
| T |
20573344 |
agtattttgtacctcaatatttcatgga |
20573371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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